Hg_chrom4_TN10mRNA_8461
Organism: Heterodera glycines Gene Locus: chr4:7873826-7874260 Feature type: polypeptideProtein Sequence
Length: 76
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.224 | 0.918 | 0.478 | 0.907 | 0.877 | 4.049 | 0.627 | 1.974 | 0.0 | 0.889 | 2.193 | 2.322 | 0.731 | 1.265 | 0.537 | 0.752 | 0.431 | 0.598 | 0.0 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7947
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.076
|
0.036
|
0.574
|
0.172
|
0.064
|
0.237
|
0.001
|
0.153
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008945
|
1.000
|
1.000
|
Hsc_gene_14572.t1
|
Hsc_gene_14572.t1
|
— |
Q5ZMM5.1 Zinc finger protein 706 [Gallus gallus]
|
NP_001161150.1 zinc finger protein 706 [Xenopus tropicalis];AAI67670.1 LOC100170591 protein [Xenopus tropicalis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.934|GO:0005575_0.927|GO:0110165_0.923|GO:0065007_0.907|GO:0050789_0.902|GO:0009987_0.875|GO:0050794_0.873|GO:0005622_0.831|GO:0016020_0.785|GO:0032501_0.774|GO:0043226_0.773|GO:0043229_0.763|GO:0048519_0.763|GO:0008152_0.758|GO:0019222_0.758|GO:0044238_0.755|GO:0080090_0.755|GO:0043170_0.751|GO:0060255_0.751|GO:0009058_0.750|GO:0009059_0.750|GO:0010467_0.750|GO:0044237_0.750|GO:0044249_0.750|GO:0031323_0.746|GO:0005737_0.740|GO:0032502_0.738|GO:0048523_0.736|GO:0009889_0.731|GO:0010556_0.731|GO:0031326_0.731|GO:0010468_0.725|GO:0006139_0.720|GO:0034654_0.720|GO:0051239_0.716|GO:0016070_0.712|GO:0032774_0.712|GO:0090304_0.712|GO:0141187_0.712|GO:0043227_0.711|GO:0019219_0.709|GO:0006351_0.708|GO:0043231_0.708|GO:0051252_0.706|GO:0006355_0.704|GO:2001141_0.704|GO:0009892_0.699|GO:0010605_0.695|GO:0050793_0.691|GO:0031324_0.690|GO:0009890_0.686|GO:0010558_0.686|GO:0031327_0.686|GO:0051241_0.681|GO:0045934_0.679|GO:0051253_0.679|GO:0045892_0.678|GO:1902679_0.678|GO:0051093_0.674|GO:0019827_0.670|GO:0098727_0.670|GO:1902455_0.670|GO:2000036_0.670|GO:0005634_0.620
|
IPR007513+1-37+|IPR026939+1-71+|IPR045230+1-75+
|
— |
PF04419+1-37+Small_EDRK-rich_factor_1/2-like,_N-terminal
|
— |
PTHR21213+1-75+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-76
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
8531.770
|
10.436
|
8.500
|
28.947
|
7.895
|
56.579
|
43.421
|
21.053
|
7.895
|
43.421
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
948.824
|
829.452
|
1147.845
|
1245.846
|
1383.511
|
1315.349
|
1364.917
|
1086.887
|
476.020
|
653.914
|
577.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.239
|
0.450
|
0.227
|
0.119
|
— | — |
-0.380
|
0.473
|
— | — |
1.895
|
— | — |
No JSON data available for plots.