Hg_chrom4_TN10mRNA_8462
Organism: Heterodera glycines Gene Locus: chr4:7876260-7879438 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.99 | 1.032 | 1.141 | 1.576 | 0.667 | 1.154 | 1.655 | 0.893 | 0.767 | 0.788 | 0.834 | 1.248 | 0.864 | 1.447 | 1.114 | 0.543 | 0.716 | 2.0 | 1.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7948
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
7-32
|
0.946
|
21-53
|
0.997
|
— | — |
0.000
|
— | — |
0.277
|
0.334
|
0.131
|
0.348
|
0.242
|
0.238
|
0.129
|
0.113
|
0.178
|
0.733
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008946
|
1.000
|
1.000
|
Hsc_gene_14571.t1
|
Hsc_gene_14571.t1
|
— |
P43510.1 Cathepsin B-like cysteine proteinase 6 [Caenorhabditis elegans]
|
KAI1717028.1 papain family cysteine protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.739|GO:0110165_0.739|GO:0008150_0.718|GO:0003674_0.659|GO:0005622_0.575|GO:0009987_0.526|GO:0005737_0.514|GO:0016020_0.509|GO:0003824_0.503
|
IPR000169+150-161+|IPR000668+128-376_128-379_150-165_328-338_343-349+|IPR013128+94-372+|IPR025660+326-336+|IPR025661+343-362+|IPR038765+71-381+
|
SM00645+128-379+
|
PF00112+128-376+Papain_family_cysteine_protease
|
G3DSA:3.90.70.10:FF:000031+62-383+Cathepsin_B
|
PTHR12411+94-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
375-423
|
1.000
|
1-374
|
4i05_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
47840.160
|
5.899
|
-5.000
|
30.733
|
14.421
|
48.700
|
51.300
|
15.603
|
15.130
|
50.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
4139.034
|
6229.245
|
6127.982
|
1373.701
|
1577.889
|
3754.274
|
9442.997
|
6854.501
|
5073.345
|
1043.046
|
2770.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.252
|
-2.318
|
-2.049
|
0.168
|
1.266
|
1.341
|
0.766
|
0.604
|
2.166
|
-1.727
|
— | — | — |
No JSON data available for plots.