Hg_chrom4_TN10mRNA_8464
Organism: Heterodera glycines Gene Locus: chr4:7885613-7889293 Feature type: polypeptideProtein Sequence
Length: 588
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.226 | 0.633 | 0.588 | 0.469 | 0.595 | 0.654 | 0.931 | 0.935 | 1.172 | 2.16 | 0.309 | 0.7 | 2.362 | 1.079 | 1.007 | 1.385 | 0.753 | 0.644 | 1.701 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7950
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.096
|
0.122
|
0.030
|
0.189
|
0.364
|
0.479
|
0.468
|
0.032
|
0.546
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003905
|
1.000
|
2.000
|
Hsc_gene_14568.t1;Hsc_gene_14568.t2
|
Hsc_gene_14568.t1;Hsc_gene_14568.t2
|
— |
Q9XIH6.1 Putative polyol transporter 2 [Arabidopsis thaliana]
|
KAI1716383.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.881|GO:0005575_0.846|GO:0110165_0.845|GO:0016020_0.788|GO:0009987_0.774|GO:0006810_0.700|GO:0051179_0.700|GO:0051234_0.700|GO:0071944_0.689|GO:0005886_0.678|GO:0003674_0.638|GO:0055085_0.618|GO:0005215_0.502|GO:0022857_0.502
|
IPR005828+12-478+|IPR005829+131-156_340-356+|IPR020846+11-469+|IPR036259+3-482_22-476+|IPR045263+4-480+
|
— |
PF00083+12-478+Sugar_(and_other)_transporter
|
— |
PTHR23503+4-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-588
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
64273.660
|
7.676
|
6.500
|
15.646
|
14.626
|
35.204
|
64.796
|
8.844
|
6.803
|
49.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
836.596
|
2153.863
|
1082.363
|
494.337
|
356.041
|
455.578
|
920.264
|
727.984
|
170.947
|
1210.486
|
764.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.223
|
-2.261
|
-1.022
|
-0.506
|
0.371
|
1.023
|
0.573
|
0.479
|
— | — | — | — | — |
No JSON data available for plots.