SCN Proteipedia

Hg_chrom4_TN10mRNA_8465

Organism: Heterodera glycines Gene Locus: chr4:7890033-7891643 Feature type: polypeptide

Protein Sequence

Length: 259

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.988	0.539	0.842	0.533	0.386	0.693	0.781	1.931	1.03	1.722	0.644	2.271	1.823	0.743	0.867	0.827	0.443	1.697	2.97	1.136	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7951	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	KKVKATHVPSYWRRSRL	—	—	—	—	—	—	0.000	—	—	0.059	0.112	0.038	0.096	0.819	0.329	0.498	0.003	0.196	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008948	1.000	1.000	Hsc_gene_14566.t1	Hsc_gene_14566.t1	—	—	KAI1724394.1 FAR-17a/AIG1-like protein [Ditylenchus destructor]	No	0.130

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.944\|GO:0009987_0.884\|GO:0005575_0.882\|GO:0110165_0.882\|GO:0003674_0.878\|GO:0016020_0.839\|GO:0008152_0.773\|GO:0003824_0.766\|GO:0044237_0.749\|GO:0044238_0.748\|GO:0044281_0.729\|GO:0006629_0.703\|GO:0009056_0.697\|GO:0006082_0.695\|GO:0019752_0.695\|GO:0043436_0.695\|GO:0044255_0.692\|GO:0016787_0.687\|GO:0044248_0.687\|GO:0006631_0.686\|GO:0032787_0.686\|GO:0044282_0.683\|GO:0016054_0.682\|GO:0046395_0.682\|GO:0072329_0.682\|GO:0016042_0.679\|GO:0001676_0.677\|GO:0044242_0.677\|GO:0009062_0.676\|GO:0042758_0.670\|GO:0071944_0.552\|GO:0005886_0.529\|GO:0051179_0.443\|GO:0006810_0.437\|GO:0051234_0.437\|GO:0050896_0.431\|GO:0065007_0.424\|GO:0050789_0.405\|GO:0032501_0.400\|GO:0051716_0.398\|GO:0009058_0.393\|GO:0050794_0.387\|GO:0042221_0.377\|GO:0032502_0.376\|GO:0048856_0.376\|GO:0044249_0.375\|GO:0071705_0.372\|GO:0006950_0.369\|GO:0019538_0.369\|GO:0043170_0.369\|GO:0071840_0.368\|GO:0065008_0.365\|GO:0007275_0.363\|GO:0016043_0.361\|GO:0048731_0.360\|GO:0006793_0.358\|GO:0006796_0.358\|GO:0048518_0.356\|GO:0048519_0.356\|GO:0009059_0.354\|GO:0032879_0.352\|GO:0048522_0.351\|GO:0051641_0.351	IPR006838+8-247_15-228+	—	PF04750+15-228+FAR-17a/AIG1-like_protein	—	PTHR10989+8-247+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	247-259	1.000	1-246	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.672	29460.780	8.756	9.000	19.305	18.147	32.819	67.181	12.355	6.950	47.104

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	2085.067	6451.140	3226.454	1916.853	1490.878	1684.631	1482.546	2214.919	1461.071	1101.080	1255.362

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.228	-1.888	-0.643	-0.395	0.191	-0.175	0.292	-0.438	—	—	—	—	—

No JSON data available for plots.

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