Hg_chrom4_TN10mRNA_8469
Organism: Heterodera glycines Gene Locus: chr4:7899215-7905925 Feature type: polypeptideProtein Sequence
Length: 1,233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 1.358 | 0.958 | 0.503 | 0.581 | 1.206 | 0.608 | 1.784 | 0.685 | 0.964 | 0.823 | 0.954 | 0.811 | 1.466 | 0.877 | 2.074 | 1.064 | 0.995 | 0.686 | 0.215 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7955
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKQQQQKTLQLSANKKFHR
|
— | — |
62-101
|
0.984
|
— | — |
0.000
|
— | — |
0.248
|
0.195
|
0.084
|
0.644
|
0.202
|
0.394
|
0.327
|
0.017
|
0.464
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008950
|
1.000
|
1.000
|
Hsc_gene_14562.t1
|
Hsc_gene_14562.t1
|
— |
Q9R037.1 WD repeat-containing protein 44 [Rattus norvegicus]
|
KAH7719849.1 CBR-SYM-4 protein [Aphelenchus avenae]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.874|GO:0110165_0.874|GO:0008150_0.841|GO:0005622_0.792|GO:0009987_0.735|GO:0043226_0.711|GO:0043229_0.708|GO:0016020_0.671|GO:0065007_0.634|GO:0050789_0.625|GO:0050794_0.600|GO:0043227_0.567|GO:0003674_0.549|GO:0005737_0.549|GO:0043231_0.505
|
IPR001680+724-764_732-763_734-763_857-896_859-895_864-905_899-938_901-937_905-939_940-982_990-1030_1004-1030_1035-1074_1052-1073_1053-1073+|IPR015943+723-1125+|IPR036322+733-1115+|IPR040324+417-1231+
|
SM00320+724-764_857-896_899-938_940-982_990-1030_1035-1074+
|
PF00400+734-763_859-895_901-937_1004-1030_1052-1073+WD_domain,_G-beta_repeat
|
— |
PTHR14221+417-1231+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-848
|
1.000
|
849-1233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
131682.700
|
8.654
|
34.000
|
22.060
|
8.110
|
53.609
|
46.391
|
13.301
|
8.759
|
62.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
1781.071
|
1206.137
|
1181.356
|
1152.429
|
1293.060
|
1113.924
|
2222.666
|
895.802
|
595.399
|
3946.121
|
2510.097
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.260
|
-0.203
|
— |
0.135
|
-0.201
|
1.007
|
-0.421
|
1.454
|
-2.840
|
— | — | — | — |
No JSON data available for plots.