Hg_chrom4_TN10mRNA_8470
Organism: Heterodera glycines Gene Locus: chr4:7906527-7907786 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 0.661 | 0.826 | 0.392 | 1.231 | 0.728 | 0.744 | 1.136 | 1.389 | 0.691 | 0.603 | 2.34 | 1.42 | 1.311 | 2.551 | 0.974 | 0.466 | 0.517 | 2.622 | 1.17 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7956
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.723
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRRLVAEWGPMRMRYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.136
|
0.951
|
0.115
|
0.148
|
0.015
|
0.019
|
0.024
|
0.011
|
0.036
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008951
|
1.000
|
1.000
|
Hsc_gene_14561.t1
|
Hsc_gene_14561.t1
|
— | — |
CRZ22747.1 BMA-MRPS-14 [Brugia malayi]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.863|GO:0110165_0.851|GO:0005622_0.810|GO:0016020_0.786|GO:0043226_0.775|GO:0043229_0.763|GO:0005737_0.727|GO:0043227_0.719|GO:0043231_0.712|GO:0008150_0.704|GO:0003674_0.656|GO:0009987_0.636|GO:0008152_0.609|GO:0009058_0.587|GO:0044238_0.587|GO:0044237_0.581|GO:0005739_0.565|GO:0043170_0.565|GO:0044249_0.561|GO:0009059_0.542|GO:0010467_0.533|GO:0019538_0.507
|
IPR001209+91-152+
|
— | — | — |
PTHR19836+91-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
20686.630
|
10.145
|
10.000
|
30.682
|
14.773
|
46.023
|
53.977
|
18.750
|
11.932
|
43.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1081.084
|
626.802
|
957.313
|
1158.533
|
1429.184
|
1039.091
|
819.804
|
774.815
|
1418.440
|
1113.836
|
1244.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.381
|
0.749
|
0.385
|
0.271
|
-0.445
|
-0.330
|
-0.528
|
— | — | — | — | — | — |
No JSON data available for plots.