Hg_chrom4_TN10mRNA_8472
Organism: Heterodera glycines Gene Locus: chr4:7910188-7912906 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 1.327 | 0.601 | 0.518 | 1.051 | 1.001 | 0.751 | 1.652 | 0.934 | 1.664 | 0.91 | 0.883 | 3.086 | 0.866 | 1.961 | 0.472 | 0.64 | 0.501 | 1.155 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7958
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KIKRRR,RKFPPTIETLRKFKQ,KRSIGEKENDEEGKGRRKQ,RRKQQKFMSGQFHFEKIKR,RKQQKFMSGQFHFEKIKRR
|
2-56
|
0.967
|
— | — | — | — |
0.374
|
— | — |
0.090
|
0.093
|
0.003
|
0.224
|
0.424
|
0.155
|
0.819
|
0.004
|
0.174
|
0.373
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008952
|
1.000
|
1.000
|
Hsc_gene_14689.t1
|
Hsc_gene_14689.t1
|
— |
O17645.2 Heparan sulfate 2-O-sulfotransferase hst-2 [Caenorhabditis elegans]
|
KAI1716320.1 sulfotransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008146|GO:0016020
|
GO:0008150_0.674|GO:0005575_0.654|GO:0110165_0.654|GO:0009987_0.626|GO:0016020_0.608|GO:0003674_0.605|GO:0005622_0.561|GO:0043226_0.551|GO:0043229_0.538|GO:0071944_0.507|GO:0043227_0.506|GO:0005886_0.501|GO:0043231_0.501
|
IPR005331+43-171+|IPR007734+42-299+|IPR027417+33-211_41-333+
|
— |
PF03567+43-171+Sulfotransferase_family
|
G3DSA:3.40.50.300:FF:001418+39-332+Heparan_sulfate_2-o-sulfotransferase
|
PTHR12129+42-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
39507.750
|
10.540
|
25.500
|
28.529
|
18.619
|
45.345
|
54.655
|
18.919
|
9.610
|
37.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
718.386
|
907.778
|
657.755
|
729.874
|
696.406
|
658.845
|
690.040
|
709.150
|
1072.731
|
444.698
|
713.855
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.695
|
-0.451
|
0.260
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.