SCN Proteipedia

Hg_chrom4_TN10mRNA_8474

Organism: Heterodera glycines Gene Locus: chr4:7913834-7923552 Feature type: polypeptide

Protein Sequence

Length: 1,375

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.761	1.015	0.82	0.552	0.933	0.876	0.848	1.709	0.695	1.15	0.65	1.283	1.253	1.259	2.019	1.642	1.025	0.617	0.615	0.513	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7959	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKPK,RKRPVPNGMERPRRL,RRSVDTTQQLQLRKSTRKK,RRQQRSRGGRRGGGGRQRR,RRRRKKKSYWTELQRRPLK	—	—	—	—	—	—	0.000	—	—	0.939	0.071	0.028	0.252	0.051	0.027	0.029	0.060	0.059	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002125	2.000	2.000	Hsc_gene_14688.t1;Hsc_gene_14688.t2	Hsc_gene_14688.t1;Hsc_gene_14688.t2	—	—	KAI1724400.1 VEFS-Box of polycomb protein [Ditylenchus destructor]	No	-0.210

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.967\|GO:0005575_0.938\|GO:0110165_0.938\|GO:0009987_0.924\|GO:0065007_0.914\|GO:0050789_0.892\|GO:0050794_0.881\|GO:0016020_0.870\|GO:0005622_0.862\|GO:0032502_0.833\|GO:0048856_0.833\|GO:0032501_0.832\|GO:0043226_0.827\|GO:0050896_0.824\|GO:0043229_0.817\|GO:0008152_0.802\|GO:0043170_0.802\|GO:0007275_0.796\|GO:0071840_0.786\|GO:0009058_0.782\|GO:0019222_0.781\|GO:0044237_0.780\|GO:0048731_0.779\|GO:0016043_0.774\|GO:0031323_0.774\|GO:0009059_0.773\|GO:0044249_0.773\|GO:0043227_0.770\|GO:0060255_0.769\|GO:0048519_0.767\|GO:0010467_0.764\|GO:0048869_0.762\|GO:0030154_0.759\|GO:0048523_0.750\|GO:0007399_0.748\|GO:0009889_0.747\|GO:0043231_0.746\|GO:0031326_0.745\|GO:0010556_0.744\|GO:0010468_0.743\|GO:0022008_0.740\|GO:0048583_0.726\|GO:0009892_0.708\|GO:0031324_0.702\|GO:0010605_0.701\|GO:0009628_0.700\|GO:0009890_0.694\|GO:0010558_0.694\|GO:0031327_0.694\|GO:0048585_0.685\|GO:0010629_0.683\|GO:0005634_0.682\|GO:0006325_0.682\|GO:0006338_0.682\|GO:0040029_0.678\|GO:0009314_0.677\|GO:0010212_0.670\|GO:0010332_0.670\|GO:0031507_0.670\|GO:0045814_0.670\|GO:0140718_0.670\|GO:2001228_0.670\|GO:2001229_0.670\|GO:0032991_0.635\|GO:0031974_0.605\|GO:0031981_0.605\|GO:0043233_0.605\|GO:0070013_0.605\|GO:0005654_0.590\|GO:0140513_0.561\|GO:1902494_0.554\|GO:1990234_0.546\|GO:0031519_0.540\|GO:0034708_0.540\|GO:0035097_0.540\|GO:0035098_0.540	IPR019135+1102-1190+	—	PF09733+1102-1190+VEFS-Box_of_polycomb_protein	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-444;754-857	2.000	445-753;858-1375	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.941	153346.530	10.386	79.500	27.709	10.473	53.236	46.764	17.600	10.109	52.509

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1819.516	1958.954	1496.964	1454.358	1622.007	1901.883	2885.562	952.146	853.633	2718.205	1919.103

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.618	-0.567	—	0.125	0.244	0.612	-1.104	1.742	—	—	—	—	—

No JSON data available for plots.

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