Hg_chrom4_TN10mRNA_8475
Organism: Heterodera glycines Gene Locus: chr4:7924571-7927556 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.166 | 0.501 | 0.864 | 0.877 | 0.707 | 1.104 | 1.754 | 1.337 | 1.422 | 0.759 | 2.359 | 2.089 | 0.289 | 0.46 | 1.325 | 0.904 | 1.063 | 0.386 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.549
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
53-73
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.038
|
0.064
|
0.013
|
0.118
|
0.435
|
0.715
|
0.552
|
0.009
|
0.766
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008953
|
1.000
|
1.000
|
Hsc_gene_14687.t1
|
Hsc_gene_14687.t1
|
— |
Q5FVQ0.1 Metal cation symporter ZIP8 [Rattus norvegicus]
|
KAI1716340.1 ZIP zinc transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.876|GO:0005575_0.842|GO:0110165_0.842|GO:0016020_0.811|GO:0009987_0.799|GO:0071944_0.760|GO:0005886_0.754|GO:0006810_0.688|GO:0051179_0.688|GO:0051234_0.688|GO:0003674_0.676|GO:0055085_0.614|GO:0006811_0.561|GO:0034220_0.561|GO:0005215_0.555|GO:0022857_0.555|GO:0098660_0.538|GO:0006812_0.525|GO:0015075_0.525|GO:0030001_0.525|GO:0098655_0.524|GO:0098662_0.519|GO:0008324_0.507
|
IPR003689+32-390+|IPR050799+21-397+
|
— |
PF02535+32-390+ZIP_Zinc_transporter
|
— |
PTHR12191+21-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-207
|
2.000
|
1-140;208-399
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
43295.080
|
6.978
|
4.000
|
18.797
|
13.283
|
41.353
|
58.647
|
10.777
|
8.020
|
50.877
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
1108.716
|
1024.307
|
1011.622
|
1246.904
|
1683.639
|
1485.762
|
1692.876
|
1077.246
|
881.688
|
730.982
|
795.570
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.249
|
0.146
|
0.411
|
0.401
|
-0.166
|
0.198
|
-0.569
|
0.794
|
— | — | — | — | — |
No JSON data available for plots.