Hg_chrom4_TN10mRNA_8476
Organism: Heterodera glycines Gene Locus: chr4:7927773-7935711 Feature type: polypeptideProtein Sequence
Length: 1,452
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 0.817 | 0.764 | 1.947 | 0.895 | 1.06 | 1.049 | 1.894 | 0.719 | 1.098 | 0.584 | 0.486 | 1.301 | 1.642 | 1.476 | 1.092 | 0.79 | 0.824 | 1.218 | 0.486 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7961
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RPGRRRRRRR
|
— | — | — | — |
1-19
|
0.986
|
1.000
|
0.000
|
0.000
|
0.201
|
0.298
|
0.006
|
0.270
|
0.190
|
0.088
|
0.164
|
0.044
|
0.472
|
0.799
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008954
|
1.000
|
1.000
|
Hsc_gene_14686.t1
|
Hsc_gene_14686.t1
|
— |
Q22328.3 Protein lev-9 [Caenorhabditis elegans]
|
KAI6232242.1 Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.837|GO:0005575_0.804|GO:0110165_0.779|GO:0009987_0.704|GO:0065007_0.625|GO:0050896_0.606|GO:0050789_0.600|GO:0016020_0.529|GO:0003674_0.528|GO:0032502_0.506|GO:0048856_0.506|GO:0032501_0.504|GO:0050794_0.504
|
IPR000436+91-149_93-147_93-148_151-231_153-229_153-230_232-290_234-288_234-289_291-348_293-346_293-347_349-406_351-404_408-462_467-523_529-603_531-601_556-602_563-601_671-719_778-847_964-1045_988-1043_1168-1228_1170-1226_1171-1226_1181-1226_1229-1288_1231-1286_1231-1287_1289-1361_1291-1360_1309-1360_1323-1361_1362-1423_1364-1421+|IPR035976+92-160_182-243_233-302_292-360_344-405_408-470_459-517_561-604_1001-1046_1183-1235_1226-1292_1320-1368_1364-1422+|IPR050350+234-440+
|
SM00032+93-147_153-229_234-288_293-346_351-404_408-462_467-523_531-601_671-719_778-847_988-1043_1170-1226_1231-1286_1291-1360_1364-1421+
|
PF00084+93-147_234-288_293-346_351-404_408-462_563-601_1171-1226_1309-1360_1364-1421+Sushi_repeat_(SCR_repeat)
|
— |
PTHR19325+234-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
604-661;1416-1452
|
2.000
|
1-603;662-1415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
159674.400
|
8.073
|
49.500
|
24.449
|
11.708
|
44.559
|
55.441
|
14.876
|
9.573
|
55.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
698.073
|
481.410
|
758.154
|
180.591
|
126.501
|
208.479
|
141.666
|
1091.448
|
155.766
|
1816.650
|
1104.843
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.426
|
-1.552
|
-1.961
|
-0.544
|
0.735
|
-0.549
|
2.289
|
-2.806
|
-3.648
|
— |
-3.513
|
— | — |