Hg_chrom4_TN10mRNA_8477
Organism: Heterodera glycines Gene Locus: chr4:7937256-7940375 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.618 | 0.917 | 0.78 | 0.651 | 1.029 | 1.056 | 0.694 | 1.801 | 1.41 | 1.136 | 0.546 | 1.513 | 1.429 | 1.319 | 1.75 | 0.956 | 0.787 | 1.04 | 1.583 | 0.858 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7962
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRLEIIIEAAAELKRRGLR,RKEWPQLDKDELYAKQRIR
|
8-45
|
0.970
|
— | — | — | — |
0.000
|
— | — |
0.272
|
0.277
|
0.059
|
0.336
|
0.796
|
0.277
|
0.368
|
0.005
|
0.203
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008955
|
1.000
|
1.000
|
Hsc_gene_14684.t1
|
Hsc_gene_14684.t1
|
— |
Q9DBE8.2 Alpha-1,3/1,6-mannosyltransferase ALG2 [Mus musculus]
|
KAH7719819.1 Protein BUS-8 [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004378|GO:0006486|GO:0016757
|
GO:0005575_0.829|GO:0110165_0.829|GO:0008150_0.722|GO:0009987_0.682|GO:0005622_0.620|GO:0071944_0.589|GO:0016020_0.542|GO:0003674_0.539|GO:0008152_0.536|GO:0043226_0.534|GO:0043229_0.525|GO:0009058_0.518|GO:0044237_0.517|GO:0044249_0.506
|
IPR001296+253-392+|IPR027054+52-451+|IPR028098+64-239+
|
— |
PF00534+253-392+Glycosyl_transferases_group_1|PF13439+64-239+Glycosyltransferase_Family_4
|
— |
PTHR45918+52-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
448-583
|
1.000
|
1-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
67102.050
|
8.897
|
20.500
|
26.244
|
13.722
|
45.798
|
54.202
|
15.780
|
10.463
|
46.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
374.580
|
139.344
|
61.897
|
39.749
|
564.902
|
655.848
|
99.496
|
348.174
|
40.686
|
892.246
|
527.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.402
|
-1.946
|
-0.527
|
3.796
|
— |
-2.710
|
-1.016
|
-1.665
|
-4.598
|
— | — | — | — |
No JSON data available for plots.