Hg_chrom4_TN10mRNA_8478
Organism: Heterodera glycines Gene Locus: chr4:7942305-7945672 Feature type: polypeptideProtein Sequence
Length: 612
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.14 | 0.654 | 1.24 | 0.708 | 0.88 | 0.545 | 2.124 | 0.908 | 0.994 | 0.47 | 0.673 | 1.271 | 1.257 | 1.634 | 1.984 | 0.777 | 0.767 | 1.131 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7963
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— |
RKISQHHNRNRQKRN,KRNQQHNQRHHRDRRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.164
|
0.123
|
0.014
|
0.176
|
0.385
|
0.372
|
0.779
|
0.054
|
0.197
|
0.505
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008956
|
1.000
|
1.000
|
Hsc_gene_14683.t1
|
Hsc_gene_14683.t1
|
— |
Q6QMT2.1 Beta-1,3-galactosyltransferase bre-2 [Caenorhabditis elegans]
|
KAI6191842.1 Glycosyl transferase, family 31-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.972|GO:0009987_0.794|GO:0008152_0.726|GO:0009058_0.724|GO:0044238_0.702|GO:0003674_0.695|GO:0044237_0.634|GO:0044249_0.628|GO:0005575_0.530|GO:0110165_0.530|GO:1901135_0.514|GO:0043170_0.511|GO:0003824_0.509|GO:1901137_0.508
|
IPR002659+355-576_387-573+
|
— |
PF01762+387-573+Galactosyltransferase
|
— |
PTHR11214+355-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-241
|
2.000
|
1-163;242-612
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
67918.410
|
9.072
|
33.000
|
23.203
|
12.908
|
50.163
|
49.837
|
15.359
|
7.843
|
55.719
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
447.535
|
364.957
|
167.689
|
179.694
|
708.171
|
1042.378
|
344.802
|
485.245
|
2.310
|
721.384
|
413.209
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.354
|
-1.159
|
— |
1.946
|
0.574
|
-1.587
|
-1.200
|
— |
-8.762
|
6.835
|
— | — | — |
No JSON data available for plots.