Hg_chrom4_TN10mRNA_8490
Organism: Heterodera glycines Gene Locus: chr4:7987821-7990184 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 0.972 | 0.877 | 0.444 | 1.608 | 1.979 | 0.498 | 1.608 | 0.857 | 1.217 | 1.023 | 0.757 | 1.161 | 1.175 | 1.181 | 0.735 | 1.054 | 0.926 | 1.237 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7971
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.472
|
0.409
|
0.059
|
0.678
|
0.273
|
0.266
|
0.338
|
0.051
|
0.094
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008960
|
1.000
|
1.000
|
Hsc_gene_7948.t1
|
Hsc_gene_14673.t1;Hsc_gene_7948.t1
|
— |
P34685.1 F-actin-capping protein subunit alpha [Caenorhabditis elegans]
|
KAF7640401.1 F-actin-capping protein subunit alpha [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008290|GO:0051016
|
GO:0005575_0.900|GO:0110165_0.889|GO:0005622_0.852|GO:0005737_0.710|GO:0043226_0.697|GO:0043229_0.677|GO:0016020_0.645|GO:0008150_0.632|GO:0009987_0.586|GO:0043228_0.517|GO:0043232_0.517
|
IPR002189+4-294_15-293_168-182_264-283+|IPR017865+208-216_268-278+|IPR037282+7-292+|IPR042276+117-270+|IPR042489+2-111+
|
— |
PF01267+15-293+F-actin_capping_protein_alpha_subunit
|
G3DSA:3.90.1150.210:FF:000003+118-270+F-actin-capping_protein_subunit_alpha
|
PTHR10653+4-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
292-311
|
1.000
|
1-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
35900.470
|
6.347
|
-1.000
|
30.225
|
11.576
|
53.698
|
46.302
|
15.756
|
14.469
|
44.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
2617.515
|
3007.959
|
2856.905
|
2523.590
|
2665.551
|
3016.430
|
3345.325
|
4309.610
|
2312.932
|
1569.917
|
1888.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.303
|
-0.391
|
— | — |
0.193
|
0.159
|
0.409
|
-0.223
|
— | — | — | — | — |
No JSON data available for plots.