Hg_chrom4_TN10mRNA_8491
Organism: Heterodera glycines Gene Locus: chr4:7991905-7994028 Feature type: polypeptideProtein Sequence
Length: 304
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 1.683 | 0.778 | 0.681 | 1.261 | 0.928 | 0.979 | 1.645 | 1.389 | 1.378 | 0.797 | 1.354 | 2.193 | 0.633 | 0.94 | 0.94 | 0.755 | 0.797 | 0.506 | 0.58 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7972
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.984
|
1.000
|
1.000
|
1.000
|
0.492
|
0.078
|
0.009
|
0.544
|
0.319
|
0.125
|
0.109
|
0.068
|
0.140
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003908
|
2.000
|
1.000
|
Hsc_gene_14672.t1
|
Hsc_gene_14672.t1;Hsc_gene_7949.t1;Hsc_gene_7949.t2
|
— | — |
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.777|GO:0005575_0.701|GO:0110165_0.700|GO:0005622_0.607|GO:0009987_0.564|GO:0005737_0.552|GO:0016020_0.549
|
IPR001870+74-263+|IPR003877+138-262_141-259+|IPR013320+91-260+|IPR043136+69-273+|IPR044736+126-259+|IPR050618+76-260+
|
SM00449+138-262+
|
PF00622+141-259+SPRY_domain
|
— |
PTHR12864+76-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-92
|
2.000
|
1-35;93-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
34298.040
|
6.337
|
-1.000
|
25.000
|
13.816
|
47.039
|
52.961
|
13.158
|
11.842
|
46.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
555.389
|
48.238
|
175.713
|
91.538
|
108.876
|
348.538
|
403.493
|
353.733
|
208.356
|
1699.759
|
1060.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.636
|
0.787
|
-0.834
|
— |
1.694
|
— | — | — |
-3.097
|
— |
-3.475
|
— | — |