Hg_chrom4_TN10mRNA_8492
Organism: Heterodera glycines Gene Locus: chr4:7991905-7994028 Feature type: polypeptideProtein Sequence
Length: 303
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 1.689 | 0.78 | 0.683 | 1.265 | 0.931 | 0.982 | 1.65 | 1.393 | 1.383 | 0.8 | 1.359 | 2.2 | 0.635 | 0.943 | 0.943 | 0.757 | 0.8 | 0.508 | 0.582 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7972
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.812
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.981
|
1.000
|
1.000
|
1.000
|
0.491
|
0.082
|
0.009
|
0.540
|
0.316
|
0.129
|
0.120
|
0.073
|
0.133
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003908
|
2.000
|
1.000
|
Hsc_gene_14672.t1
|
Hsc_gene_14672.t1;Hsc_gene_7949.t1;Hsc_gene_7949.t2
|
— | — |
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.778|GO:0005575_0.704|GO:0110165_0.704|GO:0005622_0.612|GO:0009987_0.565|GO:0005737_0.554|GO:0016020_0.552
|
IPR001870+73-262+|IPR003877+137-261_140-258+|IPR013320+90-259+|IPR043136+68-272+|IPR044736+125-258+|IPR050618+75-259+
|
SM00449+137-261+
|
PF00622+140-258+SPRY_domain
|
— |
PTHR12864+75-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-91
|
2.000
|
1-35;92-303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
34226.960
|
6.337
|
-1.000
|
25.083
|
13.861
|
47.195
|
52.805
|
13.201
|
11.881
|
46.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
555.389
|
48.238
|
175.713
|
91.538
|
108.876
|
348.538
|
403.493
|
353.733
|
208.356
|
1699.759
|
1060.586
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.636
|
0.787
|
-0.834
|
— |
1.694
|
— | — | — |
-3.097
|
— |
-3.475
|
— | — |