SCN Proteipedia

Hg_chrom4_TN10mRNA_8493

Organism: Heterodera glycines Gene Locus: chr4:7994336-7996156 Feature type: polypeptide

Protein Sequence

Length: 282

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.783	0.66	0.967	0.856	0.768	0.727	0.591	1.064	0.788	0.623	0.752	1.252	0.788	1.568	3.546	1.57	0.581	0.484	2.728	0.939	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7973	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,KRLHIGNLDESVRRRDI,RRYYDEEDSHRRRRRSRTR,HRRRRRSRTRSPRRRRSPSRSRSRTPPRRSRSPRRSARRQRSPSPKRERRDREEKDTKP	—	—	58-88	0.998	—	—	0.000	—	—	0.902	0.088	0.012	0.120	0.049	0.055	0.029	0.002	0.042	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002127	2.000	2.000	Hsc_gene_14671.t1;Hsc_gene_14671.t2	Hsc_gene_14671.t1;Hsc_gene_14671.t2	—	P84103.1 Serine/arginine-rich splicing factor 3 [Homo sapiens]	KAH7720113.1 RNA recognition motif containing proteindomain containing protein [Aphelenchus avenae]	No	-0.120

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.837\|GO:0110165_0.837\|GO:0008150_0.832\|GO:0016020_0.794\|GO:0043226_0.747\|GO:0005622_0.746\|GO:0043229_0.729\|GO:0009987_0.722\|GO:0003674_0.699\|GO:0005488_0.683\|GO:0043227_0.675\|GO:0043231_0.675\|GO:0008152_0.643\|GO:0043170_0.643\|GO:0005634_0.632\|GO:0009058_0.625\|GO:0009059_0.625\|GO:0010467_0.625\|GO:0044237_0.625\|GO:0044249_0.625\|GO:0006139_0.603\|GO:0034654_0.603\|GO:0044238_0.603\|GO:0090304_0.603\|GO:0141187_0.603\|GO:0016070_0.592\|GO:0032774_0.592\|GO:0097159_0.587\|GO:0003676_0.583\|GO:0065007_0.542\|GO:0050789_0.529\|GO:0050794_0.518	IPR000504+90-164_91-160_93-156+\|IPR012677+77-172+\|IPR035979+81-192+\|IPR052600+79-270+	SM00360+91-160+	PF00076+93-156+RNA_recognition_motif	—	PTHR23295+79-270+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	149-282	1.000	1-148	1x4a_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.581	33236.690	11.645	38.000	34.397	11.702	54.610	45.390	24.468	9.929	48.227

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3969.954	8304.053	5106.524	4281.227	3709.706	4102.667	2147.848	3496.406	2810.951	3579.673	3250.220

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.931	-1.093	-0.145	-0.239	0.160	-0.924	-0.335	-0.561	—	—	—	—	—

No JSON data available for plots.

Back to Browser