Hg_chrom4_TN10mRNA_8494
Organism: Heterodera glycines Gene Locus: chr4:7994336-7996156 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 0.714 | 0.993 | 0.824 | 0.739 | 0.788 | 0.609 | 1.024 | 0.758 | 0.646 | 0.776 | 1.405 | 0.758 | 1.51 | 3.413 | 1.658 | 0.56 | 0.465 | 2.625 | 0.903 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,KRLHIGNLDESVRRRDI,RRYYDEEDSHRRRRRSRTR,HRRRRRSRTRSPRRRRSPSRSRSRTPPRRSRSPRRSARRQRSPSPKRERRDREEKDTKP
|
— | — |
59-89
|
0.998
|
— | — |
0.000
|
— | — |
0.917
|
0.077
|
0.008
|
0.111
|
0.053
|
0.050
|
0.029
|
0.002
|
0.040
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002127
|
2.000
|
2.000
|
Hsc_gene_14671.t1;Hsc_gene_14671.t2
|
Hsc_gene_14671.t1;Hsc_gene_14671.t2
|
— |
P84103.1 Serine/arginine-rich splicing factor 3 [Homo sapiens]
|
KAH7720113.1 RNA recognition motif containing proteindomain containing protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.839|GO:0110165_0.838|GO:0008150_0.833|GO:0016020_0.795|GO:0005622_0.753|GO:0043226_0.749|GO:0043229_0.739|GO:0009987_0.723|GO:0043227_0.679|GO:0043231_0.679|GO:0003674_0.677|GO:0005488_0.665|GO:0008152_0.644|GO:0043170_0.644|GO:0005634_0.641|GO:0009058_0.628|GO:0009059_0.628|GO:0010467_0.628|GO:0044237_0.628|GO:0044249_0.628|GO:0006139_0.609|GO:0034654_0.609|GO:0044238_0.609|GO:0090304_0.609|GO:0141187_0.609|GO:0016070_0.595|GO:0032774_0.595|GO:0097159_0.568|GO:0003676_0.567|GO:0065007_0.521|GO:0050789_0.512|GO:0050794_0.503
|
IPR000504+91-165_92-161_94-157+|IPR012677+78-177+|IPR035979+82-193+|IPR052600+80-266+
|
SM00360+92-161+
|
PF00076+94-157+RNA_recognition_motif
|
— |
PTHR23295+80-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-293
|
1.000
|
1-149
|
6hpj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
34355.910
|
11.591
|
38.000
|
33.788
|
11.263
|
54.949
|
45.051
|
23.891
|
9.898
|
48.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3969.954
|
8304.053
|
5106.524
|
4281.227
|
3709.706
|
4102.667
|
2147.848
|
3496.406
|
2810.951
|
3579.673
|
3250.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.931
|
-1.093
|
-0.145
|
-0.239
|
0.160
|
-0.924
|
-0.335
|
-0.561
|
— | — | — | — | — |
No JSON data available for plots.