Hg_chrom4_TN10mRNA_8495
Organism: Heterodera glycines Gene Locus: chr4:7996950-8000507 Feature type: polypeptideProtein Sequence
Length: 450
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 0.982 | 1.091 | 0.536 | 1.333 | 0.855 | 0.82 | 1.444 | 0.642 | 1.021 | 1.178 | 2.484 | 1.42 | 0.684 | 1.633 | 0.698 | 0.874 | 1.044 | 1.368 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7974
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KGKRPRGR
|
18-42
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.129
|
0.900
|
0.253
|
0.297
|
0.187
|
0.054
|
0.136
|
0.090
|
0.078
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003909
|
2.000
|
1.000
|
Hsc_gene_14670.t1
|
Hsc_gene_14670.t1
|
— |
Q8BWM0.3 Prostaglandin E synthase 2 [Mus musculus]
|
KAH7719859.1 Protein R11A8.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0050220
|
GO:0008150_0.941|GO:0003674_0.884|GO:0009987_0.882|GO:0008152_0.807|GO:0044238_0.793|GO:0044237_0.781|GO:0009058_0.776|GO:0044249_0.754|GO:0003824_0.610|GO:0005575_0.610|GO:0110165_0.609|GO:0005622_0.549|GO:0044281_0.541|GO:0016020_0.523|GO:0006082_0.518|GO:0019752_0.518|GO:0043436_0.518|GO:0006629_0.517|GO:0008610_0.513|GO:0044283_0.513|GO:0032787_0.511|GO:0044255_0.511|GO:0006631_0.509|GO:0016053_0.509|GO:0046394_0.509|GO:0006633_0.506|GO:0072330_0.506|GO:0001516_0.501|GO:0006636_0.501|GO:0006690_0.501|GO:0006692_0.501|GO:0006693_0.501|GO:0033559_0.501|GO:0046456_0.501|GO:0046457_0.501
|
IPR004045+115-183+|IPR034334+95-395+|IPR034335+244-392+|IPR036249+113-191+|IPR036282+242-392+
|
— |
PF13417+115-183+Glutathione_S-transferase,_N-terminal_domain
|
— |
PTHR12782+96-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
401-450
|
1.000
|
1-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
52196.580
|
9.014
|
14.500
|
32.667
|
13.111
|
50.444
|
49.556
|
18.667
|
14.000
|
45.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
1552.008
|
1130.940
|
1989.614
|
2053.613
|
2487.340
|
2376.368
|
2580.699
|
1372.449
|
1347.306
|
532.922
|
881.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
0.724
|
0.155
|
0.245
|
— | — |
-0.895
|
1.052
|
— | — | — | — |
6.314
|
No JSON data available for plots.