Hg_chrom4_TN10mRNA_8497
Organism: Heterodera glycines Gene Locus: chr4:8001883-8003444 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.639 | 1.187 | 0.237 | 0.63 | 2.027 | 0.818 | 1.546 | 0.687 | 1.254 | 0.521 | 1.213 | 1.432 | 1.388 | 1.964 | 0.982 | 0.676 | 0.885 | 1.057 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7975
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.662
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RHRR,RRTTPVAPDTPQGRKVQR
|
28-69
|
0.904
|
8-39
|
0.986
|
— | — |
0.000
|
— | — |
0.610
|
0.171
|
0.013
|
0.495
|
0.098
|
0.409
|
0.127
|
0.140
|
0.039
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008961
|
1.000
|
1.000
|
Hsc_gene_14669.t1
|
Hsc_gene_14669.t1
|
— |
Q5DD96.1 Alpha-tubulin N-acetyltransferase [Schistosoma japonicum]
|
KAH7719856.1 Touch receptor neuron protein Mec-17 [Aphelenchus avenae]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005874|GO:0019799|GO:0071929
|
GO:0003674_0.799|GO:0008150_0.738|GO:0003824_0.659|GO:0016740_0.620|GO:0140096_0.617|GO:0016746_0.607|GO:0016747_0.596|GO:0008080_0.590|GO:0016407_0.590|GO:0016410_0.590|GO:0019799_0.590|GO:0034212_0.590|GO:0061733_0.590|GO:0005575_0.581|GO:0110165_0.568|GO:0009987_0.502
|
IPR007965+2-197_5-204_18-197+|IPR038746+4-281+
|
— |
PF05301+18-197+GNAT_acetyltransferase,_Mec-17
|
— |
PTHR12327+4-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
208-291
|
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
32899.260
|
10.139
|
12.500
|
26.460
|
11.684
|
48.110
|
51.890
|
16.151
|
10.309
|
49.141
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
773.460
|
743.433
|
1262.506
|
548.081
|
543.776
|
647.090
|
593.098
|
932.210
|
543.698
|
999.790
|
804.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
-0.577
|
-1.095
|
— |
0.265
|
— |
0.424
|
-0.511
|
— | — | — | — | — |
No JSON data available for plots.