Hg_chrom4_TN10mRNA_8499
Organism: Heterodera glycines Gene Locus: chr4:8005911-8006890 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 1.377 | 0.718 | 0.227 | 0.658 | 2.362 | 1.488 | 3.289 | 0.439 | 1.334 | 0.399 | 1.935 | 1.096 | 0.506 | 1.343 | 0.47 | 0.863 | 0.997 | 0.0 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7977
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
8-34
|
0.818
|
— | — |
0.000
|
— | — |
0.569
|
0.098
|
0.003
|
0.490
|
0.050
|
0.069
|
0.071
|
0.012
|
0.201
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003910
|
1.000
|
2.000
|
Hsc_gene_14667.t1;Hsc_gene_14667.t2
|
Hsc_gene_14662.t1;Hsc_gene_14667.t1
|
— |
Q80U58.2 Pumilio homolog 2 [Mus musculus]
|
KAK6043035.1 RNA binding repeat protein, Pumilio-family [Cooperia oncophora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0003674_0.771|GO:0005575_0.765|GO:0110165_0.760|GO:0005488_0.714|GO:0005622_0.694|GO:0008150_0.634|GO:0005737_0.630|GO:0009987_0.576|GO:0097159_0.572|GO:0003676_0.562|GO:0065007_0.553|GO:0050789_0.543|GO:0003723_0.539|GO:0043226_0.530|GO:0043229_0.524|GO:0050794_0.522
|
IPR001313+85-120_89-123_121-150_125-140+|IPR011989+65-149+|IPR016024+66-142+|IPR033133+65-152+
|
SM00025+85-120_121-150+
|
PF00806+89-123_125-140+Pumilio-family_RNA_binding_repeat
|
— |
PTHR12537+53-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94
|
1.000
|
95-152
|
3q0s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
16529.560
|
9.087
|
7.000
|
23.684
|
11.842
|
47.368
|
52.632
|
15.789
|
7.895
|
50.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
194.418
|
198.064
|
245.720
|
168.516
|
158.613
|
136.593
|
146.881
|
188.004
|
40.710
|
354.152
|
219.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.371
|
-0.436
|
— | — | — |
0.358
|
— | — | — | — | — |
7.017
|
No JSON data available for plots.