SCN Proteipedia

Hg_chrom4_TN10mRNA_8505

Organism: Heterodera glycines Gene Locus: chr4:8021076-8025478 Feature type: polypeptide

Protein Sequence

Length: 833

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.963	1.396	0.633	0.373	0.54	1.755	1.029	3.121	0.934	0.908	0.473	2.118	0.867	1.501	0.637	1.252	1.24	0.819	0.092	0.777	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7982	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.518	0.212	0.007	0.613	0.106	0.242	0.093	0.077	0.169	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008965	1.000	1.000	Hsc_gene_14662.t1	Hsc_gene_14662.t1;Hsc_gene_14667.t1	—	Q66KI6.1 Pumilio homolog 1 [Xenopus laevis]	KAF7633398.1 PUM-HD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723	GO:0003674_0.832\|GO:0005488_0.790\|GO:0005575_0.759\|GO:0110165_0.758\|GO:0008150_0.694\|GO:0005622_0.676\|GO:0097159_0.650\|GO:0009987_0.640\|GO:0065007_0.635\|GO:0003676_0.632\|GO:0050789_0.630\|GO:0050794_0.620\|GO:0003723_0.572\|GO:0043226_0.556\|GO:0005737_0.555\|GO:0008152_0.540\|GO:0043229_0.539\|GO:0019222_0.536\|GO:0031323_0.531\|GO:0044237_0.531\|GO:0043170_0.523\|GO:0060255_0.516\|GO:0009058_0.515\|GO:0009889_0.505\|GO:0003729_0.504\|GO:0031326_0.502\|GO:0044249_0.502	IPR001313+423-458_427-461_459-494_464-496_495-530_499-532_531-566_535-566_571-606_576-609_607-642_612-645_643-678_648-681_686-722_692-720+\|IPR011989+401-754+\|IPR016024+404-744+\|IPR033133+403-747+\|IPR033712+418-743+	SM00025+423-458_459-494_495-530_531-566_571-606_607-642_643-678_686-722+	PF00806+427-461_464-496_499-532_535-566_576-609_612-645_648-681_692-720+Pumilio-family_RNA_binding_repeat	G3DSA:1.25.10.10:FF:000004+402-754+Pumilio_homolog_1_isoform_2	PTHR12537+42-746+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-425;749-833	1.000	426-748	3gvt_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.898	89651.350	7.450	22.000	19.208	12.125	48.379	51.621	12.485	6.723	57.023

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2172.710	6071.476	2145.697	3115.167	2632.323	2382.346	3955.181	1838.463	1025.038	434.082	687.349

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.730	-1.100	0.646	-0.275	—	0.741	-0.481	1.248	—	—	—	—	—

No JSON data available for plots.

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