Hg_chrom4_TN10mRNA_8508
Organism: Heterodera glycines Gene Locus: chr4:8041647-8048725 Feature type: polypeptideProtein Sequence
Length: 1,188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.116 | 1.041 | 0.697 | 1.403 | 1.317 | 0.732 | 1.305 | 0.711 | 1.49 | 0.446 | 1.535 | 1.239 | 0.761 | 1.409 | 1.251 | 0.731 | 0.727 | 0.712 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7985
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RPRR,PVPKRAR,RRNSQESEEEKENAKANRK
|
— | — | — | — | — | — |
0.004
|
— | — |
0.351
|
0.148
|
0.015
|
0.556
|
0.171
|
0.475
|
0.450
|
0.038
|
0.218
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002128
|
2.000
|
2.000
|
Hsc_gene_14657.t1;Hsc_gene_14657.t2
|
Hsc_gene_14657.t1;Hsc_gene_14657.t2;Hsc_gene_14659.t1;Hsc_gene_14659.t2;Hsc_gene_14659.t3;Hsc_gene_14660.t1
|
— |
A8P7J8.1 FHIP family protein Bm1_18400 [Brugia malayi]
|
KAI1729244.1 retinoic acid induced 16-like protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0009987_0.922|GO:0051179_0.789|GO:0051641_0.727|GO:0008104_0.700|GO:0033036_0.700|GO:0070727_0.700|GO:1905719_0.670|GO:0005575_0.626|GO:0110165_0.623|GO:0005622_0.528
|
IPR019384+69-1180_136-565+|IPR045669+971-1044+
|
— |
PF10257+136-565+Retinoic_acid_induced_16-like_protein|PF19314+971-1044+Family_of_unknown_function_(DUF5917)
|
— |
PTHR21705+69-1180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
269-327;652-966;1099-1153
|
4.000
|
1-268;328-651;967-1098;1154-1188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
132522.540
|
4.880
|
-35.500
|
26.599
|
10.017
|
49.747
|
50.253
|
12.458
|
14.141
|
49.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1679.329
|
1949.779
|
1648.310
|
1483.440
|
1999.099
|
1948.520
|
2731.547
|
1433.246
|
1510.578
|
1266.403
|
1371.049
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
-0.531
|
— |
0.399
|
— |
0.497
|
-0.550
|
1.074
|
— | — | — | — | — |
No JSON data available for plots.