Hg_chrom4_TN10mRNA_8513
Organism: Heterodera glycines Gene Locus: chr4:8089954-8093724 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 0.639 | 0.999 | 0.189 | 1.832 | 1.127 | 0.589 | 0.824 | 1.343 | 0.965 | 1.332 | 0.97 | 1.679 | 0.211 | 1.682 | 1.177 | 0.721 | 0.749 | 0.423 | 0.97 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7989
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.899
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— |
EKKAKKEAAKKKAE,RKEAEQLTNEHIDKIRQR
|
33-53
|
0.920
|
— | — | — | — |
0.000
|
— | — |
0.138
|
0.918
|
0.008
|
0.114
|
0.141
|
0.025
|
0.054
|
0.024
|
0.048
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000858
|
3.000
|
3.000
|
Hsc_gene_15849.t1;Hsc_gene_15849.t2;Hsc_gene_15849.t3
|
Hsc_gene_15849.t1;Hsc_gene_15849.t2;Hsc_gene_15849.t3;Hsc_gene_15849.t4;Hsc_gene_9348.t1
|
— | — |
KHN86406.1 mRNA turnover protein 4 -like protein [Toxocara canis]
|
MBE6635446
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
161-182
|
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
21000.720
|
8.018
|
2.500
|
35.165
|
11.538
|
54.945
|
45.055
|
18.681
|
16.484
|
41.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
349.984
|
64.163
|
106.975
|
124.170
|
168.661
|
143.666
|
237.336
|
165.765
|
134.607
|
1051.199
|
658.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
0.815
|
0.325
|
0.409
|
— |
0.734
|
— |
0.659
|
-3.080
|
— |
-2.233
|
— | — |
No JSON data available for plots.