Hg_chrom4_TN10mRNA_8514
Organism: Heterodera glycines Gene Locus: chr4:8126812-8127583 Feature type: polypeptideProtein Sequence
Length: 168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 0.692 | 1.623 | 0.411 | 1.885 | 1.679 | 0.354 | 2.679 | 1.19 | 1.85 | 0.992 | 1.401 | 1.653 | 0.687 | 1.093 | 0.935 | 0.39 | 0.451 | 1.832 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7990
|
— | — |
2.556
|
1.000
|
4.000
|
2.000
|
2.000
|
3.000
|
3.000
|
4.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.608
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.202
|
0.027
|
0.359
|
0.122
|
0.093
|
0.022
|
0.064
|
0.042
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000146
|
12.000
|
1.000
|
Hsc_gene_23909.t1
|
Hsc_gene_1151.t1;Hsc_gene_1151.t2;Hsc_gene_12064.t1;Hsc_gene_19559.t1;Hsc_gene_22469.t1;Hsc_gene_25723.t1;Hsc_gene_5850.t1;Hsc_gene_787.t1;Hsc_gene_9622.t1
|
— | — |
KAI1707339.1 hypothetical protein DdX_12435 [Ditylenchus destructor]
|
MCP5142335
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-168
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
19948.510
|
4.772
|
-9.500
|
37.500
|
13.690
|
55.952
|
44.048
|
17.262
|
20.238
|
35.119
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
89.047
|
32.907
|
78.888
|
58.171
|
71.708
|
54.635
|
42.796
|
63.348
|
40.138
|
208.557
|
136.377
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.028
|
0.684
|
-0.327
|
— | — | — | — | — | — | — | — | — |
5.291
|
No JSON data available for plots.