SCN Proteipedia

Hg_chrom4_TN10mRNA_8522

Organism: Heterodera glycines Gene Locus: chr4:8169346-8173286 Feature type: polypeptide

Protein Sequence

Length: 365

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.115	1.402	1.295	0.094	1.37	1.054	0.62	1.233	0.913	0.666	1.038	1.45	0.989	0.79	1.621	0.978	1.033	0.747	0.421	1.289	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7991	—	Hg_chrom4_TN10gene_7991	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.605

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	golgi_apparatus	—	RKGKREETIAKRRGM,KKHNTKNAPAARRRRNA,KHNTKNAPAARRRRNAEQAEKERKGKREETIAKRR	—	—	—	—	—	—	0.000	—	—	0.262	0.306	0.083	0.464	0.233	0.395	0.508	0.016	0.128	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003913	2.000	1.000	Hsc_gene_20489.t1	—	—	P49583.2 Putative choline-phosphate cytidylyltransferase [Caenorhabditis elegans]	XP_024509242.1 Cytidyltransferase-like domain and Rossmann-like alpha/beta/alpha sandwich fold domain-containing protein [Strongyloides ratti];CEF70043.1 Cytidyltransferase-like domain and Rossmann-like alpha/beta/alpha sandwich fold domain-containing protein [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004105\|GO:0006606\|GO:0006657\|GO:0009058\|GO:0061608	GO:0008150_0.861\|GO:0009987_0.764\|GO:0003674_0.754\|GO:0008152_0.700\|GO:0044238_0.681\|GO:0005575_0.675\|GO:0044237_0.674\|GO:0110165_0.665\|GO:0009058_0.663\|GO:0005622_0.646\|GO:0044249_0.641\|GO:0003824_0.618\|GO:0016020_0.587\|GO:0043226_0.582\|GO:0006793_0.574\|GO:0006796_0.574\|GO:0016740_0.569\|GO:0043229_0.564\|GO:0019637_0.560\|GO:0006629_0.553\|GO:0008610_0.552\|GO:0090407_0.552\|GO:0044255_0.551\|GO:0006644_0.548\|GO:0046486_0.548\|GO:0006650_0.544\|GO:0008654_0.544\|GO:0045017_0.544\|GO:0046474_0.544\|GO:0016772_0.543\|GO:0016779_0.535\|GO:0070567_0.528\|GO:0043227_0.527\|GO:0043231_0.513	IPR002652+7-71+\|IPR004821+129-195_132-259+\|IPR014729+89-328+\|IPR041723+126-275+\|IPR045049+20-337+	—	PF01467+132-259+Cytidylyltransferase-like\|PF01749+7-71+Importin_beta_binding_domain	G3DSA:3.40.50.620:FF:000016+88-328+Putative_choline-phosphate_cytidylyltransferase_B	PTHR10739+20-337+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-109;327-365	1.000	110-326	3hl4_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.660	41514.010	6.985	2.500	32.603	10.959	55.890	44.110	17.260	15.342	50.411

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	3982.770	1301.463	2233.854	1824.249	2582.195	6572.416	6911.077	9763.568	2964.478	3505.452	3273.606

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.551	0.350	-0.185	0.470	1.362	—	0.465	-0.354	—	—	—	—	—

No JSON data available for plots.

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