Hg_chrom4_TN10mRNA_8526
Organism: Heterodera glycines Gene Locus: chr4:8182385-8185097 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 0.714 | 0.08 | 0.151 | 0.731 | 0.562 | 0.94 | 0.877 | 1.559 | 1.719 | 0.797 | 2.58 | 1.584 | 0.759 | 0.716 | 0.877 | 0.935 | 1.462 | 1.687 | 1.677 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8000
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.116
|
0.300
|
0.107
|
0.163
|
0.956
|
0.303
|
0.437
|
0.014
|
0.146
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003914
|
2.000
|
1.000
|
Hsc_gene_6876.t1
|
— | — |
O17040.2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 [Caenorhabditis elegans]
|
KAF7633047.1 Very-long-chain [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.856|GO:0005575_0.813|GO:0110165_0.813|GO:0009987_0.805|GO:0016020_0.724|GO:0071944_0.690|GO:0005886_0.674|GO:0005622_0.671|GO:0005737_0.645|GO:0003674_0.607|GO:0043226_0.603|GO:0043229_0.597|GO:0043227_0.591|GO:0043231_0.583|GO:0005773_0.537|GO:0012505_0.508
|
IPR007482+5-217_51-211+
|
— |
PF04387+51-211+Protein_tyrosine_phosphatase-like_protein,_PTPLA
|
— |
PTHR11035+5-217+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-228
|
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
25567.460
|
9.964
|
11.000
|
15.351
|
15.351
|
32.456
|
67.544
|
10.526
|
4.825
|
45.175
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2264.556
|
316.572
|
488.470
|
2764.867
|
7653.009
|
3173.095
|
2639.602
|
497.329
|
571.134
|
2904.226
|
1904.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.397
|
2.990
|
2.610
|
1.437
|
-1.256
|
-0.256
|
-2.777
|
2.549
|
-2.444
|
— |
1.603
|
— | — |
No JSON data available for plots.