Hg_chrom4_TN10mRNA_8528
Organism: Heterodera glycines Gene Locus: chr4:8190119-8192142 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 2.196 | 1.01 | 0.958 | 1.019 | 0.997 | 0.728 | 1.667 | 1.296 | 1.276 | 1.01 | 1.634 | 1.62 | 0.588 | 0.794 | 0.556 | 0.729 | 0.715 | 2.35 | 0.735 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8002
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.792
|
0.430
|
0.000
|
— |
0.268
|
0.313
|
0.020
|
0.352
|
0.425
|
0.152
|
0.221
|
0.013
|
0.319
|
0.445
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008968
|
2.000
|
0.000
|
0.000
|
— | — |
Q91YY2.1 Beta-1,4-galactosyltransferase 3 [Mus musculus]
|
NP_001006719.1 beta-1,4-galactosyltransferase 3-like 1 [Xenopus tropicalis];AAH75452.1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 [Xenopus tropicalis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016757
|
GO:0008150_0.911|GO:0008152_0.747|GO:0009987_0.747|GO:0003674_0.721|GO:0044237_0.657|GO:0003824_0.654|GO:0044238_0.653|GO:0005575_0.650|GO:0110165_0.647|GO:0009058_0.642|GO:0044249_0.622|GO:1901135_0.580|GO:1901137_0.557|GO:0016740_0.553|GO:0005622_0.523|GO:0016020_0.521|GO:0005737_0.514|GO:0043170_0.508
|
IPR003859+76-331_127-146_164-183_210-231_232-250+|IPR027791+213-272+|IPR027995+44-184+|IPR029044+15-331_76-331+
|
— |
PF02709+213-272+N-terminal_domain_of_galactosyltransferase|PF13733+44-184+N-terminal_region_of_glycosyl_transferase_group_7
|
— |
PTHR19300+76-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
41468.250
|
6.759
|
2.000
|
25.556
|
14.722
|
47.222
|
52.778
|
13.889
|
11.667
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
177.573
|
5.013
|
90.078
|
138.774
|
155.744
|
374.248
|
203.585
|
360.102
|
102.147
|
202.440
|
159.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.932
|
4.646
|
0.732
|
— |
1.278
|
-0.870
|
— |
-0.684
|
— | — | — | — | — |