Hg_chrom4_TN10mRNA_8529
Organism: Heterodera glycines Gene Locus: chr4:8190235-8192142 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 2.016 | 1.126 | 1.068 | 0.98 | 1.032 | 0.848 | 1.858 | 1.101 | 1.255 | 1.032 | 1.821 | 1.462 | 0.655 | 0.885 | 0.575 | 0.609 | 0.797 | 1.905 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8002
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
46-76
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.239
|
0.327
|
0.018
|
0.355
|
0.456
|
0.146
|
0.256
|
0.011
|
0.293
|
0.481
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008968
|
2.000
|
0.000
|
0.000
|
— | — |
Q91YY2.1 Beta-1,4-galactosyltransferase 3 [Mus musculus]
|
NP_001006719.1 beta-1,4-galactosyltransferase 3-like 1 [Xenopus tropicalis];AAH75452.1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 [Xenopus tropicalis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016757
|
GO:0008150_0.910|GO:0008152_0.758|GO:0009987_0.744|GO:0003674_0.722|GO:0044237_0.667|GO:0044238_0.662|GO:0003824_0.657|GO:0009058_0.650|GO:0005575_0.642|GO:0110165_0.637|GO:0044249_0.628|GO:1901135_0.579|GO:0016740_0.557|GO:1901137_0.556|GO:0005622_0.531|GO:0043170_0.517|GO:0005737_0.513|GO:0016020_0.511
|
IPR003859+39-294_90-109_127-146_173-194_195-213+|IPR027791+176-235+|IPR027995+40-147+|IPR029044+4-294_39-294+
|
— |
PF02709+176-235+N-terminal_domain_of_galactosyltransferase|PF13733+40-147+N-terminal_region_of_glycosyl_transferase_group_7
|
— |
PTHR19300+39-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
37056.180
|
6.902
|
3.000
|
26.935
|
14.241
|
47.368
|
52.632
|
14.861
|
12.074
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
177.573
|
5.013
|
90.078
|
138.774
|
155.744
|
374.248
|
203.585
|
360.102
|
102.147
|
202.440
|
159.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.932
|
4.646
|
0.732
|
— |
1.278
|
-0.870
|
— |
-0.684
|
— | — | — | — | — |
No JSON data available for plots.