Hg_chrom4_TN10mRNA_8534
Organism: Heterodera glycines Gene Locus: chr4:8224710-8226641 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 0.437 | 1.11 | 0.324 | 0.861 | 1.204 | 0.838 | 2.817 | 0.939 | 0.888 | 1.138 | 0.552 | 1.174 | 1.625 | 0.862 | 1.073 | 1.001 | 1.707 | 0.0 | 0.276 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8007
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.507
|
0.543
|
0.098
|
0.478
|
0.123
|
0.200
|
0.067
|
0.066
|
0.168
|
0.267
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008969
|
1.000
|
1.000
|
Hsc_gene_21155.t1
|
— | — |
P34328.1 Heat shock protein Hsp-12.2 [Caenorhabditis elegans]
|
KAH7705846.1 HSP-12.2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.830|GO:0005575_0.801|GO:0110165_0.799|GO:0005622_0.757|GO:0005737_0.676|GO:0003674_0.648|GO:0009987_0.630|GO:0050896_0.577|GO:0065007_0.539|GO:0005488_0.533|GO:0050789_0.533|GO:0043226_0.524|GO:0016020_0.516|GO:0043229_0.504
|
IPR001436+138-212+|IPR002068+22-103_127-213_138-212+|IPR008978+15-111_22-98_127-213_136-212+
|
— |
PF00011+22-103_138-212+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+138-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-213
|
1.000
|
1-183
|
2wj5_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
23182.380
|
8.041
|
7.000
|
28.638
|
10.798
|
48.826
|
51.174
|
17.371
|
11.268
|
55.869
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1398.069
|
142.366
|
7143.853
|
368.086
|
95.977
|
610.411
|
26.551
|
4608.653
|
100.910
|
1167.408
|
710.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.421
|
1.233
|
-4.171
|
-1.972
|
2.683
|
-4.516
|
2.814
|
-7.300
|
— | — | — | — | — |
No JSON data available for plots.