Hg_chrom4_TN10mRNA_8535
Organism: Heterodera glycines Gene Locus: chr4:8250954-8261302 Feature type: polypeptideProtein Sequence
Length: 681
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.144 | 0.615 | 0.828 | 1.519 | 0.465 | 1.017 | 0.734 | 1.982 | 0.751 | 1.25 | 0.645 | 1.037 | 1.428 | 1.384 | 2.008 | 1.259 | 0.602 | 0.845 | 1.807 | 0.13 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK,RRIFGKEGKRRRRPA,RIFGKEGKRRRRPAHK,RKSAKIPMRLRESVRKCTK
|
58-83
|
0.995
|
9-35
|
1.000
|
— | — |
0.000
|
— | — |
0.293
|
0.261
|
0.021
|
0.599
|
0.136
|
0.162
|
0.169
|
0.022
|
0.254
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002131
|
2.000
|
2.000
|
Hsc_gene_11714.t1;Hsc_gene_1788.t1
|
— | — |
Q7T2D0.1 Small G protein signaling modulator 3 [Danio rerio]
|
KAI1732181.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.929|GO:0005575_0.882|GO:0110165_0.882|GO:0065007_0.797|GO:0050789_0.785|GO:0009987_0.758|GO:0050794_0.658|GO:0005622_0.629|GO:0003674_0.616|GO:0016020_0.549|GO:0005488_0.528
|
IPR001452+395-452_396-451_406-450+|IPR004012+479-613+|IPR035969+5-139+|IPR036028+406-454+|IPR037213+462-618+
|
SM00326+396-451+
|
PF02759+479-613+RUN_domain|PF07653+406-450+Variant_SH3_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
289-337
|
2.000
|
1-288;338-681
|
2yuo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
75893.610
|
10.646
|
59.500
|
25.404
|
11.894
|
44.493
|
55.507
|
18.062
|
7.342
|
52.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
darkmagenta
|
52.645
|
0.999
|
1.167
|
1.695
|
1.342
|
0.878
|
1.726
|
2.743
|
18.834
|
212.241
|
129.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-3.557
|
-3.419
|
-7.208
|
— | — |
No JSON data available for plots.