SCN Proteipedia

Hg_chrom4_TN10mRNA_8536

Organism: Heterodera glycines Gene Locus: chr4:8308707-8314549 Feature type: polypeptide

Protein Sequence

Length: 578

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.744	1.006	1.164	0.537	1.038	0.932	1.092	1.038	0.961	1.029	0.786	1.628	1.153	0.932	1.659	0.989	0.567	1.022	1.331	1.272	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8009	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	GRRRARRRSR	31-51	0.899	—	—	—	—	0.000	—	—	0.172	0.364	0.018	0.608	0.154	0.343	0.253	0.031	0.750	0.224

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008970	1.000	1.000	Hsc_gene_23319.t1	—	—	G5EE56.1 Tyrosine protein-kinase src-1 [Caenorhabditis elegans]	KAI3413752.1 inner nuclear membrane protein enriched at telomere/subtelomere region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.864\|GO:0003674_0.769\|GO:0005575_0.769\|GO:0003824_0.767\|GO:0110165_0.753\|GO:0016740_0.730\|GO:0009987_0.709\|GO:0140096_0.695\|GO:0005622_0.671\|GO:0065007_0.658\|GO:0016772_0.648\|GO:0050789_0.616\|GO:0016301_0.613\|GO:0016773_0.599\|GO:0050896_0.594\|GO:0032501_0.584\|GO:0004672_0.579\|GO:0005737_0.579\|GO:0050794_0.571\|GO:0016020_0.551\|GO:0051716_0.521\|GO:0005488_0.517\|GO:0008152_0.505	IPR000719+277-535+\|IPR000980+155-243_157-237_157-252+\|IPR001245+279-529_349-362_386-404_439-449_458-480_502-524+\|IPR001452+91-151_94-150_97-142+\|IPR008266+392-404+\|IPR011009+264-543+\|IPR017441+283-305+\|IPR020635+277-531+\|IPR036028+85-162+\|IPR036860+148-254_152-297+\|IPR050198+117-533+	SM00219+277-531+\|SM00252+155-243+\|SM00326+94-150+	PF00017+157-237+SH2_domain\|PF00018+97-142+SH3_domain\|PF07714+279-529+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:000399+354-542+Tyrosine-protein_kinase\|G3DSA:3.30.200.20:FF:000053+268-353+Tyrosine-protein_kinase	PTHR24418+117-533+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-86;550-578	1.000	87-549	3geq_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.820	65352.950	8.202	10.000	28.028	12.284	46.367	53.633	15.398	12.630	49.827

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	920.812	1015.121	769.819	912.583	1125.047	1253.250	1246.842	718.184	324.968	1144.508	793.277

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.628	-0.291	0.354	0.270	0.171	—	-0.909	0.938	-1.917	—	—	—	—

No JSON data available for plots.

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