SCN Proteipedia

Hg_chrom4_TN10mRNA_8537

Organism: Heterodera glycines Gene Locus: chr4:8314710-8318434 Feature type: polypeptide

Protein Sequence

Length: 471

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.741	1.086	1.004	0.586	1.274	0.98	0.632	1.274	0.802	1.119	0.869	1.873	1.415	1.021	1.213	0.819	0.731	1.319	1.47	1.311	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8010	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.559

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.378	0.185	0.029	0.649	0.131	0.553	0.202	0.008	0.458	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008971	1.000	1.000	Hsc_gene_23318.t1	Hsc_gene_23318.t1	—	G5EE56.1 Tyrosine protein-kinase src-1 [Caenorhabditis elegans]	KAI3413751.1 inner nuclear membrane protein enriched at telomere/subtelomere region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.831\|GO:0005575_0.780\|GO:0110165_0.759\|GO:0003674_0.755\|GO:0003824_0.732\|GO:0009987_0.713\|GO:0005622_0.698\|GO:0016740_0.664\|GO:0065007_0.630\|GO:0140096_0.629\|GO:0005737_0.617\|GO:0050789_0.593\|GO:0050896_0.583\|GO:0016020_0.576\|GO:0016772_0.574\|GO:0050794_0.572\|GO:0016301_0.546\|GO:0016773_0.542\|GO:0032501_0.536\|GO:0004672_0.532\|GO:0051716_0.525\|GO:0005488_0.511	IPR000719+182-460+\|IPR000980+57-148_59-142_59-157+\|IPR001245+183-454_254-267_303-321_356-366_375-397+\|IPR001452+1-52_1-53_2-45+\|IPR008266+309-321+\|IPR011009+158-454+\|IPR020635+182-456+\|IPR036028+1-73+\|IPR036860+48-159_55-202+\|IPR050198+51-458+	SM00219+182-456+\|SM00252+57-148+\|SM00326+1-52+	PF00017+59-142+SH2_domain\|PF00018+2-45+SH3_domain\|PF07714+183-454+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:000399+259-467+Tyrosine-protein_kinase\|G3DSA:3.30.200.20:FF:000053+173-258+Tyrosine-protein_kinase	PTHR24418+51-458+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-471	2dq7_X	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.549	54244.870	6.375	-1.000	27.389	14.013	46.072	53.928	14.225	13.163	47.771

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	794.240	990.671	808.063	827.649	818.479	838.133	754.062	1187.188	535.687	738.942	651.833

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.523	-0.397	0.143	—	—	—	0.397	-0.512	—	—	—	—	—

No JSON data available for plots.

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