Hg_chrom4_TN10mRNA_8539
Organism: Heterodera glycines Gene Locus: chr4:8319219-8324260 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 1.303 | 1.083 | 0.242 | 0.73 | 3.862 | 1.022 | 1.926 | 0.739 | 1.018 | 0.478 | 1.545 | 0.486 | 0.741 | 0.858 | 0.951 | 1.005 | 0.796 | 0.539 | 0.206 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8012
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.603
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.707
|
0.145
|
0.018
|
0.429
|
0.097
|
0.105
|
0.108
|
0.008
|
0.131
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003917
|
1.000
|
2.000
|
Hsc_gene_23317.t1;Hsc_gene_23317.t2
|
— | — |
P52655.1 Transcription initiation factor IIA subunit 1 [Homo sapiens]
|
KAI1720659.1 transcription factor IIA, alpha/beta subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0005672|GO:0006367
|
GO:0005575_0.840|GO:0110165_0.840|GO:0005622_0.770|GO:0016020_0.745|GO:0003674_0.719|GO:0043226_0.713|GO:0005488_0.712|GO:0043229_0.682|GO:0008150_0.675|GO:0005515_0.658|GO:0043227_0.653|GO:0043231_0.642|GO:0009987_0.633|GO:0005634_0.603|GO:0065007_0.525|GO:0032991_0.522|GO:0005737_0.521|GO:0008152_0.519|GO:0043170_0.519|GO:0050789_0.516|GO:0050794_0.504|GO:0044238_0.503
|
IPR004855+11-235_11-571_13-235_271-571+|IPR009088+511-571_515-571+
|
SM01371+11-571+
|
PF03153+13-235_271-571+Transcription_factor_IIA,_alpha/beta_subunit
|
G3DSA:2.30.18.10:FF:000008+510-571+Transcription_factor_TFIIA_complex_large_subunit
|
PTHR12694+11-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;44-235;290-528
|
3.000
|
6-43;236-289;529-571
|
8was_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
61973.090
|
6.024
|
-6.000
|
21.541
|
7.005
|
54.991
|
45.009
|
11.208
|
10.333
|
52.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1124.529
|
1878.409
|
1236.819
|
1248.559
|
1337.703
|
1226.794
|
1515.263
|
1254.568
|
1250.060
|
345.478
|
733.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.833
|
-0.726
|
0.123
|
— | — |
0.316
|
— |
0.415
|
— | — | — | — | — |
No JSON data available for plots.