Hg_chrom4_TN10mRNA_8552
Organism: Heterodera glycines Gene Locus: chr4:8543478-8544473 Feature type: polypeptideProtein Sequence
Length: 84
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 0.0 | 0.216 | 0.821 | 0.198 | 2.137 | 2.268 | 0.0 | 1.058 | 1.287 | 0.541 | 4.202 | 1.323 | 0.687 | 1.458 | 0.85 | 0.976 | 1.263 | 0.0 | 0.35 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8025
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.697
|
0.217
|
0.132
|
0.215
|
0.331
|
0.301
|
0.011
|
0.079
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008973
|
1.000
|
1.000
|
Hsc_gene_22860.t1
|
Hsc_gene_22860.t1
|
— |
P60602.1 Reactive oxygen species modulator 1 [Homo sapiens]
|
KAH7719874.1 CRE-RMO-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.930|GO:0110165_0.920|GO:0016020_0.807|GO:0005622_0.751|GO:0005737_0.728|GO:0043226_0.718|GO:0043229_0.707|GO:0043227_0.686|GO:0043231_0.676|GO:0008150_0.656|GO:0009987_0.594|GO:0005739_0.560|GO:0051179_0.504
|
IPR018450+12-84_18-84_19-84+
|
SM01378+18-84+
|
PF10247+19-84+Reactive_mitochondrial_oxygen_species_modulator_1
|
— |
PTHR28525+12-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-84
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
8778.430
|
11.497
|
7.000
|
13.095
|
5.952
|
33.333
|
66.667
|
10.714
|
2.381
|
52.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
595.488
|
191.136
|
271.634
|
738.720
|
921.940
|
574.334
|
871.577
|
216.368
|
709.394
|
653.573
|
677.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.277
|
1.814
|
1.553
|
0.287
|
-0.668
|
0.613
|
-1.511
|
2.153
|
— | — | — | — | — |
No JSON data available for plots.