Hg_chrom4_TN10mRNA_8553
Organism: Heterodera glycines Gene Locus: chr4:8544700-8545463 Feature type: polypeptideProtein Sequence
Length: 67
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.347 | 1.041 | 1.085 | 2.059 | 0.746 | 1.531 | 0.888 | 1.493 | 1.658 | 2.219 | 0.678 | 1.756 | 0.415 | 0.574 | 1.828 | 0.426 | 0.489 | 0.452 | 1.148 | 1.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8026
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.512
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.302
|
0.094
|
0.605
|
0.206
|
0.188
|
0.299
|
0.165
|
0.070
|
0.299
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008974
|
1.000
|
1.000
|
Hsc_gene_22859.t1
|
Hsc_gene_22859.t1
|
— |
A8Y1E9.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Caenorhabditis briggsae]
|
KAH7719872.1 translation initiation factor IF-2-like protein [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351|GO:0008270
|
GO:0005575_0.905|GO:0110165_0.739|GO:0032991_0.651|GO:0005622_0.628|GO:0008150_0.600|GO:0016020_0.593|GO:0043226_0.565|GO:0043229_0.565|GO:1902494_0.563|GO:1990234_0.550|GO:0140535_0.549|GO:0061695_0.548|GO:0000428_0.547|GO:0030880_0.547|GO:0009987_0.529|GO:0043227_0.528|GO:0043231_0.528
|
IPR000268+1-67_2-56_2-59+|IPR020789+2-11+|IPR023580+1-63+
|
— |
PF01194+2-59+RNA_polymerases_N_/_8_kDa_subunit
|
G3DSA:1.10.10.60:FF:000024+1-67+DNA-directed_RNA_polymerases_I,_II,_and_III_subunit
|
PTHR23431+1-67+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-67
|
9vd9_8
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
7821.170
|
8.131
|
3.000
|
26.866
|
10.448
|
43.284
|
56.716
|
16.418
|
10.448
|
38.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
261.555
|
132.985
|
209.577
|
363.188
|
486.648
|
350.184
|
478.797
|
236.595
|
141.266
|
191.615
|
170.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.424
|
1.312
|
0.904
|
0.391
|
-0.460
|
0.462
|
-0.670
|
1.160
|
— | — | — | — | — |
No JSON data available for plots.