Hg_chrom4_TN10mRNA_8554
Organism: Heterodera glycines Gene Locus: chr4:8562913-8564869 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 0.445 | 0.783 | 0.165 | 1.356 | 1.84 | 0.684 | 2.153 | 0.744 | 1.552 | 0.362 | 2.815 | 1.861 | 0.92 | 2.148 | 0.684 | 0.628 | 0.797 | 0.736 | 0.844 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8027
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
16-36
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.516
|
0.359
|
0.171
|
0.524
|
0.139
|
0.064
|
0.157
|
0.032
|
0.117
|
0.445
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003922
|
3.000
|
0.000
|
0.000
|
— | — | — |
WP_272819347.1 Fic family protein [Scytonema hofmannii]
|
MBU1019290
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0005575_0.874|GO:0110165_0.867|GO:0003674_0.857|GO:0016020_0.818|GO:0050896_0.794|GO:0003824_0.736|GO:0005886_0.724|GO:0071944_0.724|GO:0006950_0.721|GO:0016740_0.697|GO:0009987_0.684|GO:0016772_0.662|GO:0016779_0.655|GO:0070566_0.650|GO:0070733_0.650|GO:0005622_0.637|GO:0008152_0.610|GO:0005737_0.598|GO:0043226_0.594|GO:0005488_0.593|GO:0044238_0.585|GO:0051716_0.583|GO:0043229_0.571|GO:0043227_0.569|GO:0043170_0.563|GO:0005515_0.559|GO:0043231_0.556|GO:0019538_0.543|GO:0036211_0.513|GO:0043412_0.513|GO:0033554_0.501
|
IPR003812+55-201_74-162+|IPR036597+18-208_59-205+|IPR040198+54-203+
|
— |
PF02661+74-162+Fic/DOC_family
|
— |
PTHR13504+54-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
24623.270
|
8.146
|
5.500
|
29.665
|
14.833
|
47.368
|
52.632
|
17.225
|
12.440
|
37.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
29.719
|
1.552
|
5.717
|
1.508
|
3.884
|
9.785
|
5.782
|
7.141
|
2.073
|
115.201
|
66.718
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.808
|
— |
1.358
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.