Hg_chrom4_TN10mRNA_8555
Organism: Heterodera glycines Gene Locus: chr4:8567099-8570373 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.268 | 0.869 | 0.68 | 0.859 | 0.571 | 0.799 | 0.89 | 0.623 | 0.969 | 1.179 | 0.566 | 1.283 | 2.423 | 0.659 | 1.526 | 1.157 | 0.664 | 1.274 | 0.959 | 1.008 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — |
48-72
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.084
|
0.810
|
0.076
|
0.167
|
0.261
|
0.121
|
0.149
|
0.037
|
0.278
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008975
|
1.000
|
1.000
|
Hsc_gene_22855.t1
|
Hsc_gene_22855.t1;Hsc_gene_22855.t2
|
— |
Q7PQV7.2 ADP,ATP carrier protein 2 [Anopheles gambiae]
|
KAH7719885.1 ADP,ATP carrier protein 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005471|GO:0005743|GO:0055085|GO:0140021|GO:1990544
|
GO:0005575_0.830|GO:0110165_0.830|GO:0008150_0.800|GO:0016020_0.745|GO:0009987_0.731|GO:0003674_0.694|GO:0005622_0.689|GO:0005737_0.689|GO:0043226_0.650|GO:0043229_0.635|GO:0043227_0.632|GO:0043231_0.622|GO:0051179_0.598|GO:0006810_0.594|GO:0051234_0.594
|
IPR002067+28-41_41-55_90-110_143-161_191-209_242-264+|IPR002113+21-320_25-37_68-89_101-113_128-141_238-254+|IPR018108+23-115_24-118_128-218_130-219_233-320_233-321+|IPR023395+22-320_25-314+
|
— |
PF00153+24-118_130-219_233-321+Mitochondrial_carrier_protein
|
— |
PTHR45635+21-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13
|
1.000
|
14-321
|
2c3e_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
35642.210
|
9.751
|
15.000
|
19.626
|
14.642
|
38.629
|
61.371
|
12.461
|
7.165
|
52.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightgreen
|
377.833
|
389.450
|
360.670
|
321.437
|
350.146
|
320.283
|
446.224
|
423.579
|
57.448
|
630.512
|
384.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.341
|
-0.414
|
— | — | — |
0.489
|
0.297
|
— |
-3.619
|
— | — | — | — |
No JSON data available for plots.