Hg_chrom4_TN10mRNA_8556
Organism: Heterodera glycines Gene Locus: chr4:8572841-8574216 Feature type: polypeptideProtein Sequence
Length: 146
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 1.593 | 0.747 | 2.598 | 0.228 | 2.283 | 0.978 | 1.027 | 0.0 | 1.018 | 0.519 | 2.015 | 0.761 | 2.503 | 0.419 | 0.391 | 0.898 | 0.519 | 1.581 | 2.015 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8029
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.218
|
0.092
|
0.045
|
0.228
|
0.174
|
0.663
|
0.403
|
0.001
|
0.762
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008976
|
1.000
|
1.000
|
Hsc_gene_22856.t1
|
Hsc_gene_22856.t1
|
— |
Q6P828.1 Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Xenopus tropicalis]
|
KAI1724364.1 LITAF-like zinc ribbon domain-containing protein [Ditylenchus destructor]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.815|GO:0005575_0.814|GO:0110165_0.813|GO:0009987_0.640|GO:0050896_0.608|GO:0065007_0.548|GO:0005622_0.546|GO:0050789_0.537|GO:0050794_0.526|GO:0008152_0.511|GO:0043170_0.511|GO:0032501_0.505
|
IPR006629+57-145_75-144_76-145+|IPR037519+8-146+
|
SM00714+76-145+
|
PF10601+75-144+LITAF-like_zinc_ribbon_domain
|
— |
PTHR23292+8-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65
|
1.000
|
66-146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
16144.320
|
7.057
|
1.500
|
13.014
|
13.699
|
36.986
|
63.014
|
7.534
|
5.479
|
59.589
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1655.063
|
2672.685
|
1361.465
|
1324.130
|
1167.539
|
2141.934
|
1957.962
|
3184.957
|
694.035
|
1541.372
|
1178.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.202
|
-1.150
|
— |
-0.214
|
0.890
|
— | — |
-0.564
|
— | — | — | — | — |
No JSON data available for plots.