Hg_chrom4_TN10mRNA_8557
Organism: Heterodera glycines Gene Locus: chr4:8574833-8581009 Feature type: polypeptideProtein Sequence
Length: 993
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 0.656 | 0.806 | 0.243 | 3.223 | 0.671 | 0.563 | 0.554 | 0.627 | 0.517 | 2.838 | 1.007 | 0.476 | 1.472 | 1.356 | 0.82 | 0.66 | 0.61 | 0.542 | 0.355 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8030
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKKKAEEEKKKEERK,KREGKSVAEEKKGKGK,KKIGEKKTIDNKKKEE,KKEKKVAEKKDEKRGKE,KKKKEEEKKKVEEKRKTE,KKKVEEKRKTEEGKKKTE,KRKKEEEKKKVEDKKKME,KKKKEEEKKKVEDKKKME,KKKVEDKKKMEEGKKKTE,KKKVDKETNGERRKEEKK,KKTIDNKKKEEEKKEKKV,KKKTKEVKEEDEKKKESK,KRKTEEGKKKTEEKEEKRK,RKTEEGKKKTEEKEEKRKK,KKTEEKEEKRKKEEEKKKV,KKTEEKEEKRKKEEEKKKA,KRKKEEEKKKAEDEKKKVE,KKKVEEKNKAEEEKKKKEE,KKKMEEGKKKTEEKEEKRK,KKMEEGKKKTEEKEEKRKK,KKKTEEKEEKRKKEEEKKK,KKTEEKEEKRKKEEEKKKE,KRKKEEEKKKEEPKKKKKA,RKKEEEKKKEEPKKKKKAE,KKKEEPKKKKKAEEEKKKE,KKEEPKKKKKAEEEKKKEE,KKKEERKSENKSDAKKKVD,KKEERKSENKSDAKKKVDK,KRRATVEQMPKEKDKEKFK,KKKEEEREHEEDKQKKGKE,KKEEEREHEEDKQKKGKEK,KKGKEKREGKSVAEEKKGK,KKKEEEKKEKKVAEKKDEK,KKEEEKKEKKVAEKKDEKR,KRGKEEKVKETEKPKEEKK,PRKKKRRKGRRKKKQPAERR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.444
|
0.053
|
0.004
|
0.842
|
0.051
|
0.027
|
0.054
|
0.013
|
0.151
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003923
|
2.000
|
1.000
|
Hsc_gene_22858.t1
|
Hsc_gene_22857.t1;Hsc_gene_22858.t1
|
— | — |
XP_020307198.1 surface protein PspC [Loa loa];EJD76396.1 surface protein PspC [Loa loa]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-916;969-993
|
1.000
|
917-968
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
115113.610
|
9.383
|
21.500
|
50.252
|
4.733
|
65.458
|
34.542
|
26.485
|
23.766
|
39.577
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
1933.107
|
373.617
|
7380.983
|
1811.243
|
543.954
|
1171.003
|
337.748
|
4690.654
|
493.010
|
1971.635
|
1337.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.075
|
2.140
|
-1.918
|
-1.768
|
1.119
|
-1.782
|
1.900
|
-3.654
|
— | — | — | — | — |
No JSON data available for plots.