Hg_chrom4_TN10mRNA_8560
Organism: Heterodera glycines Gene Locus: chr4:8589360-8594684 Feature type: polypeptideProtein Sequence
Length: 565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.967 | 0.659 | 1.062 | 1.038 | 1.091 | 1.361 | 0.78 | 0.973 | 0.787 | 1.315 | 0.644 | 1.145 | 1.672 | 0.783 | 1.662 | 0.936 | 0.987 | 0.858 | 1.225 | 0.625 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
REAQAKERRTQRRR,KKADRSKGEGKGPRERPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.936
|
0.124
|
0.002
|
0.190
|
0.065
|
0.012
|
0.010
|
0.019
|
0.019
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002132
|
2.000
|
2.000
|
Hsc_gene_22865.t1;Hsc_gene_22865.t2
|
Hsc_gene_22865.t1;Hsc_gene_22865.t2
|
— | — |
KAI1724311.1 zinc-finger of RNA-polymerase i-specific TFIIB, rrn7 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001164|GO:0001188|GO:0006360|GO:0070860
|
— |
IPR021752+9-34+|IPR033599+10-547+
|
— |
PF11781+9-34+Zinc-finger_of_RNA-polymerase_I-specific_TFIIB,_Rrn7
|
— |
PTHR31576+10-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-565
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
63870.640
|
7.320
|
5.500
|
26.726
|
11.681
|
47.434
|
52.566
|
14.336
|
12.389
|
48.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
404.431
|
662.110
|
535.688
|
366.062
|
413.301
|
335.880
|
431.850
|
251.730
|
134.741
|
544.597
|
368.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.535
|
-0.992
|
-0.441
|
— |
-0.286
|
0.372
|
-0.524
|
0.922
|
— | — | — | — | — |
No JSON data available for plots.