Hg_chrom4_TN10mRNA_8563
Organism: Heterodera glycines Gene Locus: chr4:8610980-8613285 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.084 | 0.659 | 0.179 | 0.173 | 1.329 | 0.493 | 1.036 | 1.612 | 1.12 | 0.864 | 0.914 | 3.886 | 0.996 | 1.269 | 0.592 | 1.189 | 1.178 | 1.594 | 0.457 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8035
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
3-63
|
0.824
|
— | — |
0.000
|
— | — |
0.070
|
0.858
|
0.192
|
0.141
|
0.156
|
0.162
|
0.119
|
0.259
|
0.091
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008980
|
1.000
|
1.000
|
Hsc_gene_22869.t1
|
Hsc_gene_22869.t1
|
— |
Q2KIY1.3 Peroxisomal membrane protein 2 [Bos taurus]
|
KAI1724376.1 mpv17 / PMP22 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.845|GO:0110165_0.838|GO:0016020_0.808|GO:0008150_0.773|GO:0005622_0.738|GO:0005737_0.738|GO:0043226_0.724|GO:0043229_0.720|GO:0043227_0.715|GO:0043231_0.715|GO:0009987_0.670
|
IPR007248+19-191_133-188+
|
— |
PF04117+133-188+Mpv17_/_PMP22_family
|
— |
PTHR11266+19-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
22415.330
|
11.317
|
16.000
|
18.653
|
19.689
|
39.896
|
60.104
|
13.990
|
4.663
|
45.078
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
564.883
|
1134.678
|
286.721
|
529.633
|
829.257
|
649.020
|
658.448
|
248.361
|
83.073
|
783.016
|
483.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.216
|
-1.236
|
0.995
|
0.615
|
-0.339
|
— |
-1.487
|
1.545
|
-3.368
|
— | — | — | — |
No JSON data available for plots.