Hg_chrom4_TN10mRNA_8564
Organism: Heterodera glycines Gene Locus: chr4:8618599-8620347 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.59 | 1.252 | 0.625 | 1.268 | 1.115 | 0.69 | 1.268 | 1.61 | 1.175 | 1.263 | 2.131 | 1.006 | 0.418 | 1.257 | 0.466 | 0.832 | 0.933 | 2.23 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8036
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
— |
3.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
mitochondrion
|
— |
RKLAGVEANPTTRSARR,KKSIGHGDDMRQAKKLARK
|
21-47
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.322
|
0.511
|
0.022
|
0.372
|
0.229
|
0.087
|
0.085
|
0.026
|
0.260
|
0.292
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001233
|
4.000
|
1.000
|
Hsc_gene_23657.t1
|
Hsc_gene_22877.t1;Hsc_gene_8986.t1
|
— |
C5J6A7.1 ATP-dependent zinc metalloprotease FtsH [Mesomycoplasma conjunctivae HRC/581]
|
MDE0891444.1 ATP-dependent zinc metalloprotease FtsH [Planctomycetota bacterium]
|
XP_004039013
|
0.850
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.924|GO:0005575_0.890|GO:0110165_0.886|GO:0005622_0.824|GO:0016020_0.805|GO:0043226_0.766|GO:0043229_0.757|GO:0009987_0.536|GO:0005737_0.514
|
IPR000642+90-184+|IPR037219+79-247_88-243+
|
— |
PF01434+90-184+Peptidase_family_M41
|
— |
PTHR23076+71-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-276
|
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
31811.790
|
7.389
|
3.500
|
31.522
|
11.594
|
46.739
|
53.261
|
17.029
|
14.493
|
42.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
35.303
|
2.762
|
2.460
|
10.375
|
22.064
|
186.266
|
5.078
|
105.450
|
2.056
|
27.489
|
16.589
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.773
|
2.180
|
1.058
|
3.086
|
-5.189
|
-0.930
|
-4.233
|
— | — | — | — | — |
No JSON data available for plots.