SCN Proteipedia

Hg_chrom4_TN10mRNA_8571

Organism: Heterodera glycines Gene Locus: chr4:8721827-8732273 Feature type: polypeptide

Protein Sequence

Length: 1,191

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	0.762	0.931	0.753	1.106	1.141	1.05	1.553	0.877	1.112	0.56	0.79	0.933	1.502	1.508	0.864	0.743	1.539	0.388	0.568	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8043	—	—	1.667	2.000	2.000	1.000	1.000	2.000	2.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRQK	—	—	—	—	—	—	0.000	—	—	0.279	0.268	0.019	0.675	0.164	0.110	0.227	0.056	0.311	0.216

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001661	2.000	2.000	Hsc_gene_9350.t1;Hsc_gene_9350.t2	Hsc_gene_9350.t1	—	Q9VEN1.2 Filamin-A [Drosophila melanogaster]	KAI1724320.1 filamin repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0030036\|GO:0051015	GO:0005575_0.892\|GO:0110165_0.886\|GO:0008150_0.865\|GO:0009987_0.792\|GO:0005622_0.780\|GO:0003674_0.737\|GO:0043226_0.715\|GO:0016020_0.706\|GO:0043229_0.692\|GO:0071944_0.681\|GO:0005737_0.667\|GO:0005886_0.656\|GO:0005488_0.637\|GO:0032502_0.593\|GO:0048856_0.593\|GO:0030029_0.592\|GO:0005515_0.589\|GO:0043228_0.582\|GO:0043232_0.582\|GO:0071840_0.565\|GO:0016043_0.558\|GO:0050896_0.549\|GO:0006996_0.522\|GO:0007010_0.513\|GO:0030036_0.507	IPR001298+63-156_275-366_367-456_457-549_550-640_645-732_850-944_947-1039_1041-1136+\|IPR013783+65-161_283-364_365-459_460-551_552-643_644-733_734-838_842-946_948-1039_1040-1143+\|IPR014756+17-157_287-366_369-455_466-556_547-639_645-734_729-828_850-943_963-1054_1029-1136+\|IPR017868+59-153_74-149_288-363_365-450_373-453_461-543_461-546_544-637_547-633_645-725_645-729_727-836_846-941_851-937_943-1036_952-1033_1037-1133_1040-1129+\|IPR044801+391-1139+	SM00557+63-156_275-366_367-456_457-549_550-640_645-732_850-944_947-1039_1041-1136+	PF00630+74-149_365-450_461-543_547-633_645-725_851-937_952-1033_1040-1129+Filamin/ABP280_repeat	G3DSA:2.60.40.10:FF:001145+1040-1139+Jitterbug,_isoform_I	PTHR38537+391-1139+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-81;665-709	2.000	82-664;710-1191	2k7p_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.770	129956.760	6.998	10.500	25.945	8.900	44.249	55.751	14.190	11.755	55.416

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	2874.678	4978.972	2356.190	2203.031	1960.924	3411.296	1941.609	2306.784	810.009	4784.655	3081.235

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.308	-1.313	—	-0.200	0.814	-0.804	-0.677	—	-2.663	1.601	—	—	—

No JSON data available for plots.

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