Hg_chrom4_TN10mRNA_8578
Organism: Heterodera glycines Gene Locus: chr4:8786981-8788420 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.556 | 1.099 | 0.716 | 1.629 | 0.787 | 0.404 | 0.469 | 1.181 | 0.525 | 1.17 | 0.477 | 2.316 | 2.625 | 1.06 | 0.964 | 0.675 | 0.774 | 1.432 | 1.817 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8049
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.116
|
0.123
|
0.035
|
0.200
|
0.603
|
0.573
|
0.418
|
0.008
|
0.407
|
0.330
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000859
|
4.000
|
2.000
|
Hsc_gene_20996.t1;Hsc_gene_9357.t1
|
Hsc_gene_11522.t1;Hsc_gene_11522.t2;Hsc_gene_12997.t1;Hsc_gene_15853.t1;Hsc_gene_16997.t1;Hsc_gene_20996.t1;Hsc_gene_3278.t1;Hsc_gene_9345.t1;Hsc_gene_9357.t1
|
— |
Q20516.1 UPF0057 membrane protein F47B7.1 [Caenorhabditis elegans]
|
KAI1697918.1 proteolipid membrane potential modulator domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR000612+55-106+
|
— |
PF01679+55-106+Proteolipid_membrane_potential_modulator
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
14172.530
|
6.678
|
0.500
|
18.898
|
15.748
|
34.646
|
65.354
|
10.236
|
8.661
|
55.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkred
|
121.795
|
32.482
|
26.925
|
40.900
|
84.297
|
139.840
|
666.295
|
55.655
|
0.000
|
140.454
|
80.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.503
|
— |
0.713
|
1.012
|
0.744
|
2.263
|
-1.443
|
3.728
|
-7.899
|
6.211
|
— | — | — |
No JSON data available for plots.