Hg_chrom4_TN10mRNA_8579
Organism: Heterodera glycines Gene Locus: chr4:8796217-8797098 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.93 | 0.873 | 0.552 | 0.667 | 2.051 | 0.952 | 0.8 | 1.244 | 0.216 | 1.091 | 0.941 | 1.556 | 1.231 | 0.816 | 1.257 | 1.049 | 1.697 | 0.0 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8050
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.715
|
0.015
|
0.867
|
0.030
|
0.059
|
0.190
|
0.215
|
0.160
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_9350.t1;Hsc_gene_9350.t2
|
— |
Q80X90.3 Filamin-B [Mus musculus]
|
KHN80522.1 Filamin-A [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0030036|GO:0051015
|
GO:0005575_0.906|GO:0110165_0.894|GO:0005622_0.825|GO:0008150_0.811|GO:0043226_0.777|GO:0043229_0.768|GO:0009987_0.742|GO:0016020_0.722|GO:0005737_0.719|GO:0003674_0.654|GO:0005488_0.628|GO:0043228_0.613|GO:0043232_0.608|GO:0030029_0.586|GO:0005515_0.581|GO:0071944_0.577|GO:0005886_0.550|GO:0071840_0.550|GO:0016043_0.544|GO:0032502_0.543|GO:0048856_0.543|GO:0006996_0.519|GO:0050896_0.513|GO:0007010_0.507|GO:0030036_0.503
|
IPR001298+41-124+|IPR013783+2-49_50-121+|IPR014756+7-45_48-118+|IPR017868+1-39_6-36_40-118_49-125+|IPR044801+6-120+
|
SM00557+41-124+
|
PF00630+6-36_40-118+Filamin/ABP280_repeat
|
— |
PTHR38537+6-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
13471.220
|
9.145
|
4.000
|
21.600
|
8.800
|
48.800
|
51.200
|
12.800
|
8.800
|
59.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
106.429
|
266.433
|
151.596
|
105.344
|
93.396
|
209.202
|
98.171
|
114.500
|
70.601
|
23.187
|
43.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.043
|
-1.476
|
-0.418
|
— |
1.179
|
-1.083
|
-0.981
|
— | — | — | — | — | — |
No JSON data available for plots.