Hg_chrom4_TN10mRNA_8602
Organism: Heterodera glycines Gene Locus: chr4:9182079-9183231 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.919 | 1.236 | 0.167 | 1.214 | 1.245 | 0.578 | 0.728 | 1.618 | 1.378 | 0.736 | 2.284 | 0.944 | 1.027 | 1.288 | 1.04 | 0.557 | 0.588 | 0.373 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.600
|
0.291
|
0.162
|
0.522
|
0.025
|
0.035
|
0.058
|
0.016
|
0.147
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000574
|
2.000
|
5.000
|
Hsc_gene_17028.t1;Hsc_gene_2994.t1;Hsc_gene_7825.t1;Hsc_gene_7892.t1;Hsc_gene_7892.t2
|
— | — |
Q9BVA6.2 Protein adenylyltransferase FICD [Homo sapiens]
|
MBU2583443.1 Fic family protein [Alphaproteobacteria bacterium]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.934|GO:0005575_0.881|GO:0110165_0.871|GO:0003674_0.837|GO:0016020_0.797|GO:0050896_0.769|GO:0003824_0.725|GO:0006950_0.725|GO:0016740_0.679|GO:0005622_0.660|GO:0016772_0.659|GO:0016779_0.656|GO:0071944_0.656|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.648|GO:0005886_0.647|GO:0005737_0.616|GO:0043226_0.612|GO:0008152_0.600|GO:0043229_0.595|GO:0043227_0.584|GO:0044238_0.583|GO:0043231_0.573|GO:0005488_0.564|GO:0043170_0.556|GO:0051716_0.542|GO:0005515_0.526|GO:0019538_0.513
|
IPR003812+52-146_52-193+|IPR036597+9-201_39-197+|IPR040198+50-157+
|
— |
PF02661+52-146+Fic/DOC_family
|
— |
PTHR13504+50-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-206
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
23557.650
|
4.944
|
-4.500
|
26.699
|
9.223
|
50.485
|
49.515
|
12.621
|
14.078
|
46.117
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
white
|
0.796
|
0.608
|
0.000
|
1.125
|
3.242
|
2.525
|
0.406
|
1.385
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
4.910
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.