Hg_chrom4_TN10mRNA_8603
Organism: Heterodera glycines Gene Locus: chr4:9188142-9190597 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.877 | 3.016 | 0.524 | 0.199 | 0.144 | 0.074 | 5.043 | 0.288 | 0.32 | 0.117 | 0.437 | 0.17 | 0.24 | 0.333 | 1.176 | 0.206 | 0.142 | 0.961 | 0.443 | 0.085 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8074
|
— | — |
0.778
|
2.000
|
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
GFGGSGGGFRWRGAAGGRGVGGVGGRGGVGGRGGGGGHGVPRNSIPGAGGGRGGGGGAGRGGDGGGGRTKRKNAAGVKKGWKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.664
|
0.126
|
0.022
|
0.555
|
0.096
|
0.013
|
0.018
|
0.004
|
0.269
|
0.431
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003508
|
2.000
|
1.000
|
Hsc_gene_1418.t1
|
Hsc_gene_1418.t1
|
— | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-347
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
29588.070
|
11.870
|
18.000
|
12.968
|
2.305
|
28.530
|
71.470
|
9.222
|
3.746
|
85.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
54.032
|
141.518
|
104.817
|
75.284
|
19.334
|
12.815
|
3.737
|
33.813
|
0.000
|
89.647
|
51.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.666
|
-1.048
|
-0.365
|
-1.997
|
— |
-1.777
|
1.300
|
-3.046
|
-7.307
|
7.091
|
— | — | — |
No JSON data available for plots.