Hg_chrom4_TN10mRNA_8609
Organism: Heterodera glycines Gene Locus: chr4:9383483-9385628 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.886 | 0.404 | 0.876 | 0.476 | 1.14 | 0.68 | 1.27 | 0.847 | 1.759 | 0.337 | 1.307 | 1.764 | 1.16 | 1.425 | 1.406 | 0.833 | 1.251 | 1.221 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8079
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRSR,RKMGLVFTRVPRDRDR
|
— | — |
14-43
|
0.998
|
— | — |
0.000
|
— | — |
0.086
|
0.059
|
0.018
|
0.078
|
0.272
|
0.149
|
0.062
|
0.040
|
0.770
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008985
|
1.000
|
1.000
|
Hsc_gene_23600.t1
|
Hsc_gene_23600.t1
|
— |
Q18321.2 G-protein coupled receptor daf-37 [Caenorhabditis elegans]
|
KAF7634616.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.886|GO:0009987_0.840|GO:0065007_0.771|GO:0005575_0.758|GO:0110165_0.755|GO:0050789_0.753|GO:0050896_0.750|GO:0003674_0.738|GO:0050794_0.732|GO:0016020_0.721|GO:0051716_0.721|GO:0007154_0.700|GO:0023052_0.699|GO:0071944_0.689|GO:0007165_0.681|GO:0005886_0.671|GO:0007186_0.590|GO:0005488_0.520|GO:0038023_0.513|GO:0060089_0.513
|
IPR000276+159-175+|IPR017452+81-210+|IPR052954+28-215+
|
— | — | — |
PTHR46641+28-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
282-315
|
1.000
|
1-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
35228.000
|
9.849
|
17.000
|
16.825
|
13.651
|
40.000
|
60.000
|
11.746
|
5.079
|
50.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
64.903
|
31.162
|
136.626
|
27.403
|
9.626
|
7.570
|
11.145
|
61.258
|
1.382
|
176.120
|
101.232
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.902
|
— |
-2.209
|
-1.539
|
— | — |
2.923
|
-2.322
|
-7.199
|
4.638
|
-3.755
|
— | — |
No JSON data available for plots.