Hg_chrom4_TN10mRNA_8610
Organism: Heterodera glycines Gene Locus: chr4:9393033-9394705 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 1.397 | 0.78 | 0.592 | 1.717 | 0.88 | 0.204 | 0.858 | 1.288 | 1.45 | 1.138 | 1.01 | 1.431 | 0.702 | 1.182 | 0.95 | 1.02 | 0.78 | 1.155 | 0.631 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8080
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.716
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKEYALATFLDVRFKDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.748
|
0.193
|
0.030
|
0.336
|
0.126
|
0.191
|
0.100
|
0.050
|
0.059
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1
|
— | — |
KAH7705065.1 zinc finger protein, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.909|GO:0110165_0.905|GO:0005622_0.869|GO:0016020_0.814|GO:0005737_0.811|GO:0043226_0.808|GO:0043229_0.781|GO:0043227_0.760|GO:0043231_0.735|GO:0003674_0.689|GO:0005634_0.633|GO:0005488_0.632|GO:0005515_0.616|GO:0031974_0.585|GO:0043233_0.585|GO:0070013_0.583|GO:0031981_0.576|GO:0005654_0.564|GO:0042802_0.531|GO:0008150_0.506
|
IPR008906+384-458+|IPR012337+8-460+|IPR052035+7-464+
|
— |
PF05699+384-458+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+7-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
53650.310
|
6.148
|
-2.000
|
29.614
|
10.515
|
51.931
|
48.069
|
15.021
|
14.592
|
44.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
70.108
|
35.847
|
32.106
|
23.264
|
23.599
|
25.852
|
9.725
|
38.071
|
16.960
|
223.329
|
134.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.761
|
— | — | — |
-1.404
|
— |
-1.828
|
— | — | — | — | — |
No JSON data available for plots.