Hg_chrom4_TN10mRNA_8611
Organism: Heterodera glycines Gene Locus: chr4:9407819-9416502 Feature type: polypeptideProtein Sequence
Length: 539
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 0.992 | 0.945 | 0.832 | 0.897 | 1.522 | 0.773 | 1.484 | 1.237 | 1.529 | 0.59 | 0.655 | 1.288 | 0.963 | 1.363 | 0.901 | 0.912 | 0.928 | 0.999 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8081
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.329
|
0.202
|
0.700
|
0.320
|
0.073
|
0.156
|
0.417
|
0.064
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002138
|
3.000
|
1.000
|
Hsc_gene_23606.t1
|
Hsc_gene_23606.t1
|
— |
A6H751.1 Folylpolyglutamate synthase, mitochondrial [Bos taurus]
|
KAI1724250.1 putative folylpolyglutamate synthase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016881
|
GO:0005575_0.776|GO:0110165_0.774|GO:0008150_0.734|GO:0005622_0.685|GO:0009987_0.677|GO:0003674_0.667|GO:0016020_0.642|GO:0005737_0.633|GO:0008152_0.571|GO:0043226_0.565|GO:0043229_0.551|GO:0044237_0.545|GO:0043227_0.544|GO:0009058_0.541|GO:0003824_0.526|GO:0043231_0.514
|
IPR001645+4-518_60-292+|IPR018109+149-164+|IPR036565+12-292_35-281+|IPR036615+344-519_346-520+
|
— | — | — |
PTHR11136+4-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-539
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
59922.460
|
7.462
|
8.000
|
24.119
|
10.204
|
46.197
|
53.803
|
13.544
|
10.575
|
49.907
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
761.861
|
20.731
|
16.347
|
15.728
|
14.665
|
25.752
|
80.498
|
32.778
|
7.230
|
3250.281
|
1860.402
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.826
|
1.654
|
— |
1.440
|
-8.935
|
— |
-7.323
|
— | — |
No JSON data available for plots.